debian/changelog

+seqsero (1.0.1+dfsg-2) unstable; urgency=medium
+
+  * Use 2to3 to port from Python2 to Python3
+    Closes: #938468
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Set upstream metadata fields: Bug-Database.
+
+ -- Andreas Tille <tille@debian.org>  Wed, 11 Dec 2019 16:49:23 +0100
+
 seqsero (1.0.1+dfsg-1) unstable; urgency=medium
 
   * New upstream version

debian/compat

-11

debian/control

@@ -3,21 +3,21 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
-               python,
+               python3,
                bwa,
                sra-toolkit
-Standards-Version: 4.2.1
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/seqsero
 Vcs-Git: https://salsa.debian.org/med-team/seqsero.git
 Homepage: https://github.com/denglab/SeqSero
 
 Package: seqsero
 Architecture: all
-Depends: ${python:Depends},
+Depends: ${python3:Depends},
          ${misc:Depends},
-         python-biopython,
+         python3-biopython,
          bwa,
          samtools,
          sra-toolkit

debian/patches/series

 fix_perl_interpreter.patch
 fix_usage.patch
+2to3.patch

debian/rules

@@ -3,7 +3,7 @@
 # DH_VERBOSE := 1
 
 %:
-	dh $@ --with python2
+	dh $@ --with python3
 
 override_dh_fixperms:
 	dh_fixperms

debian/upstream/metadata

@@ -26,3 +26,4 @@ Registry:
 - Name: conda:bioconda
   Entry: NA
   Comment: Don't confuse with seqsero2
+Bug-Database: https://github.com/denglab/SeqSero/issues