debian/changelog

+seqsero (1.0-2) UNRELEASED; urgency=medium
+
+  * Standards-Version: 4.1.4
+  * Point Vcs-fields to Salsa
+  * debhelper 11
+  * Add Build-Depends: bwa, sra-toolkit to make sure package builds only
+    on those architectures where its dependencies are fulfilled
+  * Delete unused debian/get-orig-source
+
+ -- Andreas Tille <tille@debian.org>  Fri, 27 Apr 2018 09:58:55 +0200
+
 seqsero (1.0-1) unstable; urgency=medium
 
   * Initial release (Closes: #859506)

debian/compat

-10
+11

debian/control

@@ -3,12 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                dh-python,
-               python
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/seqsero.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/seqsero.git
+               python,
+               bwa,
+               sra-toolkit
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/seqsero
+Vcs-Git: https://salsa.debian.org/med-team/seqsero.git
 Homepage: https://github.com/denglab/SeqSero
 
 Package: seqsero

debian/get-orig-source

-#!/bin/sh
-# if you need to repack for whatever reason you can
-# use this script via uscan or directly
-#
-# FIXME: currently the code is not conform to Debian Policy
-#        http://www.debian.org/doc/debian-policy/ch-source.html
-#        "get-orig-source (optional)"
-#        This target may be invoked in any directory, ...
-# --> currently it is assumed the script is called in the
-#     source directory featuring the debian/ dir
-
-# Excluding files and repacking archives
-# --------------------------------------
-# See also mk-origtargz(1) and the --repack option to uscan(1), which
-# honor the Files-Excluded list in debian/copyright.
-# That may be all you need, especially since the repack option can be set
-# in debian/watch.
-
-# For an example how to fetch source from sourceforge SVN see
-#   https://anonscm.debian.org/git/debian-med/kmer-tools.git
-
-COMPRESS=xz
-
-set -e
-NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
-
-if ! echo $@ | grep -q upstream-version ; then
-    VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
-    uscan --force-download
-else
-    VERSION=`echo $@ | sed "s?^.*--upstream-version \([0-9.]\+\) .*${NAME}.*?\1?"`
-    if echo "$VERSION" | grep -q "upstream-version" ; then
-        echo "Unable to parse version number"
-        exit
-    fi
-fi
-
-TARDIR=${NAME}-${VERSION}
-mkdir -p ../tarballs
-cd ../tarballs
-# need to clean up the tarballs dir first because upstream tarball might
-# contain a directory with unpredictable name
-rm -rf *
-tar -xaf ../${TARDIR}.tar.gz
-
-UPSTREAMTARDIR=`find . -mindepth 1 -maxdepth 1 -type d`
-if [ "${UPSTREAMTARDIR}" != "${TARDIR}" ] ; then
-    mv "${UPSTREAMTARDIR}" "${TARDIR}"
-fi
-
-# Remove useless binaries
-# ... do something which needs to be done ...
-
-GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.${COMPRESS} "${TARDIR}"
-rm -rf ${TARDIR}