Loading debian/patches/2to3.patch +24 −12 Original line number Diff line number Diff line diff --git a/simkaMin/simkaMin.py b/simkaMin/simkaMin.py index 320d6e2..c0fa28d 100755 --- a/simkaMin/simkaMin.py +++ b/simkaMin/simkaMin.py @@ -69,7 +69,7 @@ simkaMinCoreBin=args.bin Index: simka/simkaMin/simkaMin.py =================================================================== --- simka.orig/simkaMin/simkaMin.py 2019-09-12 04:15:09.951278183 +0100 +++ simka/simkaMin/simkaMin.py 2019-09-12 04:15:39.035180723 +0100 @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/python3 #***************************************************************************** # SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets # A tool from the GATB (Genome Assembly Tool Box) @@ -69,7 +69,7 @@ if args.bin is not None: # given by the user if not is_executable(simkaMinCoreBin): Loading @@ -11,17 +17,23 @@ index 320d6e2..c0fa28d 100755 exit(1) else: # Check if is in the PATH @@ -198,4 +198,4 @@ ret = os.system(exportCommand) @@ -198,4 +198,4 @@ if ret != 0: print("ERROR"); exit(1) print("\n\n") -print("Result dir: " + args.out) +print(("Result dir: " + args.out)) diff --git a/simkaMin/simkaMin_update.py b/simkaMin/simkaMin_update.py index 99968d0..c5bc0ad 100755 --- a/simkaMin/simkaMin_update.py +++ b/simkaMin/simkaMin_update.py @@ -67,7 +67,7 @@ simkaMinCoreBin=args.bin Index: simka/simkaMin/simkaMin_update.py =================================================================== --- simka.orig/simkaMin/simkaMin_update.py 2019-09-12 04:15:09.951278183 +0100 +++ simka/simkaMin/simkaMin_update.py 2019-09-12 04:15:49.975144063 +0100 @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/python3 #***************************************************************************** # SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets @@ -67,7 +67,7 @@ if args.bin is not None: # given by the user if not is_executable(simkaMinCoreBin): Loading @@ -30,7 +42,7 @@ index 99968d0..c5bc0ad 100755 exit(1) else: # Check if is in the PATH @@ -219,4 +219,4 @@ shutil.rmtree(distanceDir_newVsNew) @@ -219,4 +219,4 @@ os.remove(sketchFilename_new) print("\n\n") Loading Loading
debian/patches/2to3.patch +24 −12 Original line number Diff line number Diff line diff --git a/simkaMin/simkaMin.py b/simkaMin/simkaMin.py index 320d6e2..c0fa28d 100755 --- a/simkaMin/simkaMin.py +++ b/simkaMin/simkaMin.py @@ -69,7 +69,7 @@ simkaMinCoreBin=args.bin Index: simka/simkaMin/simkaMin.py =================================================================== --- simka.orig/simkaMin/simkaMin.py 2019-09-12 04:15:09.951278183 +0100 +++ simka/simkaMin/simkaMin.py 2019-09-12 04:15:39.035180723 +0100 @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/python3 #***************************************************************************** # SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets # A tool from the GATB (Genome Assembly Tool Box) @@ -69,7 +69,7 @@ if args.bin is not None: # given by the user if not is_executable(simkaMinCoreBin): Loading @@ -11,17 +17,23 @@ index 320d6e2..c0fa28d 100755 exit(1) else: # Check if is in the PATH @@ -198,4 +198,4 @@ ret = os.system(exportCommand) @@ -198,4 +198,4 @@ if ret != 0: print("ERROR"); exit(1) print("\n\n") -print("Result dir: " + args.out) +print(("Result dir: " + args.out)) diff --git a/simkaMin/simkaMin_update.py b/simkaMin/simkaMin_update.py index 99968d0..c5bc0ad 100755 --- a/simkaMin/simkaMin_update.py +++ b/simkaMin/simkaMin_update.py @@ -67,7 +67,7 @@ simkaMinCoreBin=args.bin Index: simka/simkaMin/simkaMin_update.py =================================================================== --- simka.orig/simkaMin/simkaMin_update.py 2019-09-12 04:15:09.951278183 +0100 +++ simka/simkaMin/simkaMin_update.py 2019-09-12 04:15:49.975144063 +0100 @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/python3 #***************************************************************************** # SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets @@ -67,7 +67,7 @@ if args.bin is not None: # given by the user if not is_executable(simkaMinCoreBin): Loading @@ -30,7 +42,7 @@ index 99968d0..c5bc0ad 100755 exit(1) else: # Check if is in the PATH @@ -219,4 +219,4 @@ shutil.rmtree(distanceDir_newVsNew) @@ -219,4 +219,4 @@ os.remove(sketchFilename_new) print("\n\n") Loading