Commit 54405f07 authored by Shayan Doust's avatar Shayan Doust
Browse files

Replace shebang for python3

parent 61d0d1c5
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+24 −12
Original line number Diff line number Diff line
diff --git a/simkaMin/simkaMin.py b/simkaMin/simkaMin.py
index 320d6e2..c0fa28d 100755
--- a/simkaMin/simkaMin.py
+++ b/simkaMin/simkaMin.py
@@ -69,7 +69,7 @@ simkaMinCoreBin=args.bin
Index: simka/simkaMin/simkaMin.py
===================================================================
--- simka.orig/simkaMin/simkaMin.py	2019-09-12 04:15:09.951278183 +0100
+++ simka/simkaMin/simkaMin.py	2019-09-12 04:15:39.035180723 +0100
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 #*****************************************************************************
 #   SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets
 #   A tool from the GATB (Genome Assembly Tool Box)
@@ -69,7 +69,7 @@
 if args.bin is not None:
     # given by the user
     if not is_executable(simkaMinCoreBin):
@@ -11,17 +17,23 @@ index 320d6e2..c0fa28d 100755
         exit(1)
 else:
     # Check if is in the PATH
@@ -198,4 +198,4 @@ ret = os.system(exportCommand)
@@ -198,4 +198,4 @@
 if ret != 0: print("ERROR"); exit(1)
 
 print("\n\n")
-print("Result dir: " + args.out)
+print(("Result dir: " + args.out))
diff --git a/simkaMin/simkaMin_update.py b/simkaMin/simkaMin_update.py
index 99968d0..c5bc0ad 100755
--- a/simkaMin/simkaMin_update.py
+++ b/simkaMin/simkaMin_update.py
@@ -67,7 +67,7 @@ simkaMinCoreBin=args.bin
Index: simka/simkaMin/simkaMin_update.py
===================================================================
--- simka.orig/simkaMin/simkaMin_update.py	2019-09-12 04:15:09.951278183 +0100
+++ simka/simkaMin/simkaMin_update.py	2019-09-12 04:15:49.975144063 +0100
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python3
 
 #*****************************************************************************
 #   SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets
@@ -67,7 +67,7 @@
 if args.bin is not None:
     # given by the user
     if not is_executable(simkaMinCoreBin):
@@ -30,7 +42,7 @@ index 99968d0..c5bc0ad 100755
         exit(1)
 else:
     # Check if is in the PATH
@@ -219,4 +219,4 @@ shutil.rmtree(distanceDir_newVsNew)
@@ -219,4 +219,4 @@
 os.remove(sketchFilename_new)
 
 print("\n\n")