Commit 57e30f38 authored by Shayan Doust's avatar Shayan Doust
Browse files

Explicitly define test command to prevent (sid) illegal operation

parent e9834b7a
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+12 −7
Original line number Diff line number Diff line
@@ -5,8 +5,8 @@ Last-Update: 2019-09-13

Index: simka/tests/simkaMin/test_simkaMin.py
===================================================================
--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 10:16:10.865442411 +0100
+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 10:16:10.861442427 +0100
--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-16 15:35:57.745165516 +0100
+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-16 15:35:57.741165482 +0100
@@ -16,28 +16,28 @@
 
 def create_command(scriptFilename, outputPrefix, k, filter, nb_reads, nb_kmers, nb_cores, input_filename):
@@ -133,8 +133,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py
             if ret != 0: exit(1)
Index: simka/tests/simple_test.py
===================================================================
--- simka.orig/tests/simple_test.py	2019-09-13 10:16:10.865442411 +0100
+++ simka/tests/simple_test.py	2019-09-13 10:16:58.213252568 +0100
--- simka.orig/tests/simple_test.py	2019-09-16 15:35:57.745165516 +0100
+++ simka/tests/simple_test.py	2019-09-16 15:35:57.741165482 +0100
@@ -91,7 +91,7 @@
 #test k=31 t=0
 clear()
@@ -185,9 +185,9 @@ Index: simka/tests/simple_test.py
 
Index: simka/example/simple_test.sh
===================================================================
--- simka.orig/example/simple_test.sh	2019-09-13 10:16:10.865442411 +0100
+++ simka/example/simple_test.sh	2019-09-13 10:16:10.861442427 +0100
@@ -3,19 +3,19 @@
--- simka.orig/example/simple_test.sh	2019-09-16 15:35:57.745165516 +0100
+++ simka/example/simple_test.sh	2019-09-16 15:36:47.117582577 +0100
@@ -3,23 +3,23 @@
 
 # look for simka binary. In devel mode, it's in ../build/bin directory.
 # In production mode, it's in ../bin directory.
@@ -219,3 +219,8 @@ Index: simka/example/simple_test.sh
 #printf "$command\n\n"
 
 # DO NOT add lines between '$command' exec and 'var...' !
-$command
+simka -in simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output
 var=$?
 
 printf "\n\n\n"