Commit 6b29d4b4 authored by Shayan Doust's avatar Shayan Doust
Browse files

Install test directory and fix test paths

parent ce6580fa
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+37 −4
Original line number Diff line number Diff line
@@ -5,8 +5,8 @@ Last-Update: 2019-09-13

Index: simka/tests/simkaMin/test_simkaMin.py
===================================================================
--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 00:54:35.331977272 +0100
+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 00:54:35.327977295 +0100
--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.362188349 +0100
+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.358188366 +0100
@@ -48,7 +48,7 @@
             for nb_reads in NB_READS:
                 for nb_kmers in NB_KMERS:
@@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py
             if ret != 0: exit(1)
Index: simka/tests/simple_test.py
===================================================================
--- simka.orig/tests/simple_test.py	2019-09-13 00:54:35.331977272 +0100
+++ simka/tests/simple_test.py	2019-09-13 00:54:35.327977295 +0100
--- simka.orig/tests/simple_test.py	2019-09-13 04:26:28.362188349 +0100
+++ simka/tests/simple_test.py	2019-09-13 04:26:28.358188366 +0100
@@ -91,7 +91,7 @@
 #test k=31 t=0
 clear()
@@ -124,3 +124,36 @@ Index: simka/tests/simple_test.py
 os.system(command + suffix)
 test_parallelization()
 
Index: simka/example/simple_test.sh
===================================================================
--- simka.orig/example/simple_test.sh	2019-09-12 22:31:11.297235515 +0100
+++ simka/example/simple_test.sh	2019-09-13 04:27:15.069993869 +0100
@@ -3,17 +3,17 @@
 
 # look for simka binary. In devel mode, it's in ../build/bin directory.
 # In production mode, it's in ../bin directory.
-if [ -f "../bin/simka" ]
-then
- bindir="../bin"
-elif [ -f "../build/bin/simka" ]
-then
- bindir="../build/bin"
-else
- echo "could not find a compiled simka binary"
- exit 1
-fi
-
+#if [ -f "../bin/simka" ]
+#then
+# bindir="../bin"
+#elif [ -f "../build/bin/simka" ]
+#then
+# bindir="../build/bin"
+#else
+# echo "could not find a compiled simka binary"
+# exit 1
+#fi
+bindir="/usr/bin"
 # run simka
 command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"
 #printf "$command\n\n"
+1 −0
Original line number Diff line number Diff line
@@ -21,6 +21,7 @@ override_dh_install:
override_dh_fixperms:
	dh_fixperms
	chmod +x debian/*/usr/bin/*
	chmod -x debian/simkamin/usr/bin/simkaMin_utils.py

override_dh_installman:
	dh_installman
+1 −0
Original line number Diff line number Diff line
@@ -3,3 +3,4 @@ debian/mans/simka.1 usr/share/man/man1
debian/mans/simkaCount.1 usr/share/man/man1
debian/mans/simkaCountProcess.1 usr/share/man/man1
debian/mans/simkaMerge.1 usr/share/man/man1
example usr/share/doc/simka