Loading debian/patches/fix_test_path.patch +37 −4 Original line number Diff line number Diff line Loading @@ -5,8 +5,8 @@ Last-Update: 2019-09-13 Index: simka/tests/simkaMin/test_simkaMin.py =================================================================== --- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 00:54:35.331977272 +0100 +++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 00:54:35.327977295 +0100 --- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 04:26:28.362188349 +0100 +++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 04:26:28.358188366 +0100 @@ -48,7 +48,7 @@ for nb_reads in NB_READS: for nb_kmers in NB_KMERS: Loading Loading @@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py if ret != 0: exit(1) Index: simka/tests/simple_test.py =================================================================== --- simka.orig/tests/simple_test.py 2019-09-13 00:54:35.331977272 +0100 +++ simka/tests/simple_test.py 2019-09-13 00:54:35.327977295 +0100 --- simka.orig/tests/simple_test.py 2019-09-13 04:26:28.362188349 +0100 +++ simka/tests/simple_test.py 2019-09-13 04:26:28.358188366 +0100 @@ -91,7 +91,7 @@ #test k=31 t=0 clear() Loading Loading @@ -124,3 +124,36 @@ Index: simka/tests/simple_test.py os.system(command + suffix) test_parallelization() Index: simka/example/simple_test.sh =================================================================== --- simka.orig/example/simple_test.sh 2019-09-12 22:31:11.297235515 +0100 +++ simka/example/simple_test.sh 2019-09-13 04:27:15.069993869 +0100 @@ -3,17 +3,17 @@ # look for simka binary. In devel mode, it's in ../build/bin directory. # In production mode, it's in ../bin directory. -if [ -f "../bin/simka" ] -then - bindir="../bin" -elif [ -f "../build/bin/simka" ] -then - bindir="../build/bin" -else - echo "could not find a compiled simka binary" - exit 1 -fi - +#if [ -f "../bin/simka" ] +#then +# bindir="../bin" +#elif [ -f "../build/bin/simka" ] +#then +# bindir="../build/bin" +#else +# echo "could not find a compiled simka binary" +# exit 1 +#fi +bindir="/usr/bin" # run simka command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output" #printf "$command\n\n" debian/rules +1 −0 Original line number Diff line number Diff line Loading @@ -21,6 +21,7 @@ override_dh_install: override_dh_fixperms: dh_fixperms chmod +x debian/*/usr/bin/* chmod -x debian/simkamin/usr/bin/simkaMin_utils.py override_dh_installman: dh_installman Loading debian/simka.install +1 −0 Original line number Diff line number Diff line Loading @@ -3,3 +3,4 @@ debian/mans/simka.1 usr/share/man/man1 debian/mans/simkaCount.1 usr/share/man/man1 debian/mans/simkaCountProcess.1 usr/share/man/man1 debian/mans/simkaMerge.1 usr/share/man/man1 example usr/share/doc/simka Loading
debian/patches/fix_test_path.patch +37 −4 Original line number Diff line number Diff line Loading @@ -5,8 +5,8 @@ Last-Update: 2019-09-13 Index: simka/tests/simkaMin/test_simkaMin.py =================================================================== --- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 00:54:35.331977272 +0100 +++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 00:54:35.327977295 +0100 --- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 04:26:28.362188349 +0100 +++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 04:26:28.358188366 +0100 @@ -48,7 +48,7 @@ for nb_reads in NB_READS: for nb_kmers in NB_KMERS: Loading Loading @@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py if ret != 0: exit(1) Index: simka/tests/simple_test.py =================================================================== --- simka.orig/tests/simple_test.py 2019-09-13 00:54:35.331977272 +0100 +++ simka/tests/simple_test.py 2019-09-13 00:54:35.327977295 +0100 --- simka.orig/tests/simple_test.py 2019-09-13 04:26:28.362188349 +0100 +++ simka/tests/simple_test.py 2019-09-13 04:26:28.358188366 +0100 @@ -91,7 +91,7 @@ #test k=31 t=0 clear() Loading Loading @@ -124,3 +124,36 @@ Index: simka/tests/simple_test.py os.system(command + suffix) test_parallelization() Index: simka/example/simple_test.sh =================================================================== --- simka.orig/example/simple_test.sh 2019-09-12 22:31:11.297235515 +0100 +++ simka/example/simple_test.sh 2019-09-13 04:27:15.069993869 +0100 @@ -3,17 +3,17 @@ # look for simka binary. In devel mode, it's in ../build/bin directory. # In production mode, it's in ../bin directory. -if [ -f "../bin/simka" ] -then - bindir="../bin" -elif [ -f "../build/bin/simka" ] -then - bindir="../build/bin" -else - echo "could not find a compiled simka binary" - exit 1 -fi - +#if [ -f "../bin/simka" ] +#then +# bindir="../bin" +#elif [ -f "../build/bin/simka" ] +#then +# bindir="../build/bin" +#else +# echo "could not find a compiled simka binary" +# exit 1 +#fi +bindir="/usr/bin" # run simka command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output" #printf "$command\n\n"
debian/rules +1 −0 Original line number Diff line number Diff line Loading @@ -21,6 +21,7 @@ override_dh_install: override_dh_fixperms: dh_fixperms chmod +x debian/*/usr/bin/* chmod -x debian/simkamin/usr/bin/simkaMin_utils.py override_dh_installman: dh_installman Loading
debian/simka.install +1 −0 Original line number Diff line number Diff line Loading @@ -3,3 +3,4 @@ debian/mans/simka.1 usr/share/man/man1 debian/mans/simkaCount.1 usr/share/man/man1 debian/mans/simkaCountProcess.1 usr/share/man/man1 debian/mans/simkaMerge.1 usr/share/man/man1 example usr/share/doc/simka