Commit c1cb0694 authored by Shayan Doust's avatar Shayan Doust
Browse files

First section of autopkgtest 

Tests simka but need to also test simkaMin
parent 6b29d4b4

debian/patches/fix_test_path.patch

+11 −8
Original line number Diff line number Diff line
@@ -5,8 +5,8 @@ Last-Update: 2019-09-13 


Index: simka/tests/simkaMin/test_simkaMin.py

===================================================================

--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.362188349 +0100

+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.358188366 +0100

--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 06:19:47.190416943 +0100

+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 06:19:47.186416959 +0100

@@ -48,7 +48,7 @@

             for nb_reads in NB_READS:

                 for nb_kmers in NB_KMERS:
@@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py 
             if ret != 0: exit(1)

Index: simka/tests/simple_test.py

===================================================================

--- simka.orig/tests/simple_test.py	2019-09-13 04:26:28.362188349 +0100

+++ simka/tests/simple_test.py	2019-09-13 04:26:28.358188366 +0100

--- simka.orig/tests/simple_test.py	2019-09-13 06:19:47.190416943 +0100

+++ simka/tests/simple_test.py	2019-09-13 06:19:47.186416959 +0100

@@ -91,7 +91,7 @@

 #test k=31 t=0

 clear()
@@ -126,9 +126,9 @@ Index: simka/tests/simple_test.py 
 

Index: simka/example/simple_test.sh

===================================================================

--- simka.orig/example/simple_test.sh	2019-09-12 22:31:11.297235515 +0100

+++ simka/example/simple_test.sh	2019-09-13 04:27:15.069993869 +0100

@@ -3,17 +3,17 @@

--- simka.orig/example/simple_test.sh	2019-09-13 06:19:47.190416943 +0100

+++ simka/example/simple_test.sh	2019-09-13 06:20:36.106219416 +0100

@@ -3,19 +3,19 @@

 

 # look for simka binary. In devel mode, it's in ../build/bin directory.

 # In production mode, it's in ../bin directory.
@@ -155,5 +155,8 @@ Index: simka/example/simple_test.sh 
+#fi

+bindir="/usr/bin"

 # run simka

 command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"

-command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"

+command="$bindir/simka -in simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"

 #printf "$command\n\n"

 

 # DO NOT add lines between '$command' exec and 'var...' !

debian/tests/run-unit-test

+4 −5
Original line number Diff line number Diff line 
#!/bin/bash

set -e



pkg=#PACKAGENAME#

pkg=simka



if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

  # Double quote below to expand the temporary directory variable now versus

  # later is on purpose.

  # shellcheck disable=SC2064

  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM

fi



cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cp -a /usr/share/doc/${pkg}/example/* "${AUTOPKGTEST_TMP}"



cd "${AUTOPKGTEST_TMP}"

gunzip *.gz



#do_stuff_to_test_package#
 
bash simple_test.sh