Apply patch from Chris Lamb to make the build reproducible (Closes: #932116)

snakemake (5.5.3-2) UNRELEASED; urgency=medium

  * Apply patch from Chris Lamb to make the build reproducible

     (Closes: #932116).

 -- Dylan Aïssi <daissi@debian.org>  Tue, 16 Jul 2019 08:13:48 +0200

snakemake (5.5.3-1) unstable; urgency=medium

  * Team upload.

Description: Make the build reproducible

Author: Chris Lamb <lamby@debian.org>

Last-Update: 2019-07-15

--- snakemake-5.5.3.orig/snakemake/report/__init__.py

+++ snakemake-5.5.3/snakemake/report/__init__.py

@@ -98,10 +98,12 @@ def data_uri_from_file(file, defaultenc=

 def report(text, path,

-           stylesheet=os.path.join(os.path.dirname(__file__), "report.css"),

+           stylesheet=None,

            defaultenc="utf8",

            template=None,

            metadata=None, **files):

+    if stylesheet is None:

+        stylesheet = os.path.join(os.path.dirname(__file__), "report.css")

     outmime, _ = mimetypes.guess_type(path)

     if outmime != "text/html":

         raise ValueError("Path to report output has to be an HTML file.")

--- snakemake-5.5.3.orig/snakemake/utils.py

+++ snakemake-5.5.3/snakemake/utils.py

@@ -189,7 +189,7 @@ def makedirs(dirnames):

 def report(text, path,

-           stylesheet=os.path.join(os.path.dirname(__file__), "report.css"),

+           stylesheet=None,

            defaultenc="utf8",

            template=None,

            metadata=None, **files):

@@ -233,6 +233,8 @@ def report(text, path,

         metadata (str):     E.g. an optional author name or email address.

     """

+    if stylesheet is None:

+        stylesheet = os.path.join(os.path.dirname(__file__), "report.css")

     try:

         import snakemake.report

     except ImportError:

0009-skip-test-without-google-cloud-sdk.patch

# 0010-skip-test-without-rmarkdown.patch

0011-fix-privacy-breach.patch

0012-reproducible-build.patch