debian/changelog

@@ -13,6 +13,12 @@ snakemake (5.5.4-1) UNRELEASED; urgency=medium
                   Document what is known about the skipped tests
   * Apply patch from upstream to fix duplicated argument (Closes: #933527)
 
+  [ Andreas Tille ]
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove obsolete fields Name, Contact from debian/upstream/metadata.
+
  -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 31 Jul 2019 11:24:24 +0200
 
 snakemake (5.5.3-1) unstable; urgency=medium

debian/compat

-11

debian/control

@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Kevin Murray <kdmfoss@gmail.com>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
                ca-certificates,
                cwltool,
@@ -35,7 +35,7 @@ Build-Depends: debhelper (>= 11~),
                python3-yaml,
                r-cran-rmarkdown
 # python3-irodsclient,  # when that enters testing
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/snakemake
 Vcs-Git: https://salsa.debian.org/med-team/snakemake.git
 Homepage: https://bitbucket.org/snakemake/snakemake

debian/rules

@@ -34,4 +34,6 @@ override_dh_auto_build:
 		python3 setup.py build_sphinx
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	PYBUILD_SYSTEM=custom dh_auto_test
+endif

debian/upstream/metadata

-Contact: Johannes Köster <johannes.koester at protonmail.com>
-Name: Snakemake
 Reference:
 - Author: Johannes Köster and Sven Rahmann
   Title: "Snakemake-a scalable bioinformatics workflow engine "