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README_release.txt
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0) Install required libraries
# ANTRL
curl -O http://www.antlr.org/download/antlr-4.5.1-complete.jar
wget http://www.antlr.org/download/antlr-4.5.1-complete.jar
mvn install:install-file -Dfile=antlr-4.5.1-complete.jar -DgroupId=org.antlr -DartifactId=antlr -Dversion=4.5.1 -Dpackaging=jar
# BioJava
wget http://biojava.org/download/maven/org/biojava/biojava3-core/3.0.7/biojava3-core-3.0.7.jar
mvn install:install-file -Dfile=biojava3-core-3.0.7.jar -DgroupId=org.biojava -DartifactId=biojava3-core -Dversion=3.0.7 -Dpackaging=jar
mvn install:install-file -Dfile=biojava3-structure-3.0.7.jar -DgroupId=org.biojava -DartifactId=biojava3-structure -Dversion=3.0.7 -Dpackaging=jar
1) Run JUnit tests (TestSuiteUnity) and make sure all of them pass
2) Run integration tests (TestSuiteIntegration)
3) Change version numbers:
wget http://biojava.org/download/maven/org/biojava/biojava3-structure/3.0.7/biojava3-structure-3.0.7.jar
mvn install:install-file -Dfile=biojava3-structure-3.0.7.jar -DgroupId=org.biojava -DartifactId=biojava3-structure -Dversion=3.0.7 -Dpackaging=jar
1) Change version numbers:
- Update SnpEff pom.xml
- Update SnpSift pom.xml
- Update scripts_build/config.sh
- Update scripts_build/make.bds
4) Build JAR files, download databases, build databases, etc.
a) Build JAR files
./scripts_build/make.sh
b) Nextprot:
- Check nextProt database: Any new release?
ftp://ftp.nextprot.org/pub/current_release/xml/
- Build nextProt database (WARNING: It takes a lot of memory!):
java -Xmx50G -jar snpEff.jar buildNextProt -v GRCh37.71 db/nextProt 2>&1 | tee buildNextProt.out
c) Motif (Jasper)
- Download latest Jaspar database
./scripts_build/download_Pwms_Jaspar.sh
- Copy to latest GRCh and GRCm (or any that has a mofit file "ls data/*/motif*)
cp db/jaspar/pwms.bin data/GRCh37.75/
cp db/jaspar/pwms.bin data/GRCm38.78/
d) Check if there is a newer dbNSFP
https://sites.google.com/site/jpopgen/dbNSFP
e) Download ENSEMBL genomes
./scripts_build/download_ensembl.sh
./scripts_build/download_ensembl_bfmpp.sh
f) Download NCBI genomes
./scripts_build/download_ncbi.sh
g) Download NCBI Human genomes
./scripts_build/download_hg19.sh
./scripts_build/download_hg19kg.sh
./scripts_build/download_hg38.sh
./scripts_build/download_hg38kg.sh
2) Build JAR files, download databases, build databases, etc.
./make.bds
5) Upload files to sourceForge
3) Run JUnit tests and integration tests
./make.bds -test
./scripts_build/uploadSourceForge.sh
4) Download databases: ENSEMBL, NCBI, dbSnp, ClinVar, dbNSFP, PDB, Jaspar, etc.
./make.bds -download
6) Update Galaxy's snpEff.xml
# Create galaxy genomes list
scripts_build/galaxy.sh
5) Build databases
./make.bds -db
7) Upload to Galaxy ToolShed: http://toolshed.g2.bx.psu.edu/
Reference: http://wiki.g2.bx.psu.edu/Tool%20Shed
6) Upload files to sourceForge
./make.bds -uploadCore # Upload core files
./make.bds -uploadDbs # Upload databases files
./make.bds -uploadHtml # Upload web pages and manual
config/snpEff.ENSEMBL_75.config
View file @ 68f06f44
#---
# Ensembl 75 versions
#---
ailMel1.75.genome : Ailuropoda_melanoleuca
ailMel1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
BGI_duck_1.0.75.genome : Anas_platyrhynchos
BGI_duck_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
AnoCar2.0.75.genome : Anolis_carolinensis
AnoCar2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
AstMex102.75.genome : Astyanax_mexicanus
AstMex102.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
UMD3.1.75.genome : Bos_taurus
UMD3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
WBcel235.75.genome : Caenorhabditis_elegans
WBcel235.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
C_jacchus3.2.1.75.genome : Callithrix_jacchus
C_jacchus3.2.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
CanFam3.1.75.genome : Canis_familiaris
CanFam3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
cavPor3.75.genome : Cavia_porcellus
cavPor3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
choHof1.75.genome : Choloepus_hoffmanni
choHof1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
KH.75.genome : Ciona_intestinalis
KH.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
CSAV2.0.75.genome : Ciona_savignyi
CSAV2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Zv9.75.genome : Danio_rerio
Zv9.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Dasnov3.0.75.genome : Dasypus_novemcinctus
Dasnov3.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
dipOrd1.75.genome : Dipodomys_ordii
dipOrd1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
BDGP5.75.genome : Drosophila_melanogaster
BDGP5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
TENREC.75.genome : Echinops_telfairi
TENREC.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
EquCab2.75.genome : Equus_caballus
EquCab2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
HEDGEHOG.75.genome : Erinaceus_europaeus
HEDGEHOG.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Felis_catus_6.2.75.genome : Felis_catus
Felis_catus_6.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
FicAlb_1.4.75.genome : Ficedula_albicollis
FicAlb_1.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
gadMor1.75.genome : Gadus_morhua
gadMor1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Galgal4.75.genome : Gallus_gallus
Galgal4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
BROADS1.75.genome : Gasterosteus_aculeatus
BROADS1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
gorGor3.1.75.genome : Gorilla_gorilla
gorGor3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
GRCh37.75.genome : Homo_sapiens
GRCh37.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
spetri2.75.genome : Ictidomys_tridecemlineatus
spetri2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
LatCha1.75.genome : Latimeria_chalumnae
LatCha1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
LepOcu1.75.genome : Lepisosteus_oculatus
LepOcu1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
loxAfr3.75.genome : Loxodonta_africana
loxAfr3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
MMUL_1.75.genome : Macaca_mulatta
MMUL_1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Meug_1.0.75.genome : Macropus_eugenii
Meug_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
UMD2.75.genome : Meleagris_gallopavo
UMD2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
micMur1.75.genome : Microcebus_murinus
micMur1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
BROADO5.75.genome : Monodelphis_domestica
BROADO5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
GRCm38.75.genome : Mus_musculus
GRCm38.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
MusPutFur1.0.75.genome : Mustela_putorius_furo
MusPutFur1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Myoluc2.0.75.genome : Myotis_lucifugus
Myoluc2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Nleu1.0.75.genome : Nomascus_leucogenys
Nleu1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
pika.75.genome : Ochotona_princeps
pika.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Orenil1.0.75.genome : Oreochromis_niloticus
Orenil1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
OANA5.75.genome : Ornithorhynchus_anatinus
OANA5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
OryCun2.0.75.genome : Oryctolagus_cuniculus
OryCun2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
MEDAKA1.75.genome : Oryzias_latipes
MEDAKA1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
OtoGar3.75.genome : Otolemur_garnettii
OtoGar3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Oar_v3.1.75.genome : Ovis_aries
Oar_v3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
CHIMP2.1.4.75.genome : Pan_troglodytes
CHIMP2.1.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
PelSin_1.0.75.genome : Pelodiscus_sinensis
PelSin_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Pmarinus_7.0.75.genome : Petromyzon_marinus
Pmarinus_7.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
PPYG2.75.genome : Pongo_abelii
PPYG2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
proCap1.75.genome : Procavia_capensis
proCap1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
pteVam1.75.genome : Pteropus_vampyrus
pteVam1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Rnor_5.0.75.genome : Rattus_norvegicus
Rnor_5.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
R64-1-1.75.genome : Saccharomyces_cerevisiae
R64-1-1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
DEVIL7.0.75.genome : Sarcophilus_harrisii
DEVIL7.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
COMMON_SHREW1.75.genome : Sorex_araneus
COMMON_SHREW1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Sscrofa10.2.75.genome : Sus_scrofa
Sscrofa10.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
taeGut3.2.4.75.genome : Taeniopygia_guttata
taeGut3.2.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
FUGU4.75.genome : Takifugu_rubripes
FUGU4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
tarSyr1.75.genome : Tarsius_syrichta
tarSyr1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
TETRAODON8.75.genome : Tetraodon_nigroviridis
TETRAODON8.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
TREESHREW.75.genome : Tupaia_belangeri
TREESHREW.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
turTru1.75.genome : Tursiops_truncatus
turTru1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
vicPac1.75.genome : Vicugna_pacos
vicPac1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
JGI_4.2.75.genome : Xenopus_tropicalis
JGI_4.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
Xipmac4.4.2.75.genome : Xiphophorus_maculatus
Xipmac4.4.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/
\ No newline at end of file
config/snpEff.ENSEMBL_78.config deleted 100644 → 0
View file @ 19d693da
ailMel1.78.genome : Ailuropoda_melanoleuca
ailMel1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
BGI_duck_1.0.78.genome : Anas_platyrhynchos
BGI_duck_1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
AnoCar2.0.78.genome : Anolis_carolinensis
AnoCar2.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
AstMex102.78.genome : Astyanax_mexicanus
AstMex102.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
UMD3.1.78.genome : Bos_taurus
UMD3.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
WBcel235.78.genome : Caenorhabditis_elegans
WBcel235.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
C_jacchus3.2.1.78.genome : Callithrix_jacchus
C_jacchus3.2.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
CanFam3.1.78.genome : Canis_familiaris
CanFam3.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
cavPor3.78.genome : Cavia_porcellus
cavPor3.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
ChlSab1.1.78.genome : Chlorocebus_sabaeus
ChlSab1.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
choHof1.78.genome : Choloepus_hoffmanni
choHof1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
KH.78.genome : Ciona_intestinalis
KH.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
CSAV2.0.78.genome : Ciona_savignyi
CSAV2.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Zv9.78.genome : Danio_rerio
Zv9.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Dasnov3.0.78.genome : Dasypus_novemcinctus
Dasnov3.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
dipOrd1.78.genome : Dipodomys_ordii
dipOrd1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
BDGP5.78.genome : Drosophila_melanogaster
BDGP5.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
TENREC.78.genome : Echinops_telfairi
TENREC.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
EquCab2.78.genome : Equus_caballus
EquCab2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
HEDGEHOG.78.genome : Erinaceus_europaeus
HEDGEHOG.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Felis_catus_6.2.78.genome : Felis_catus
Felis_catus_6.2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
FicAlb_1.4.78.genome : Ficedula_albicollis
FicAlb_1.4.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
gadMor1.78.genome : Gadus_morhua
gadMor1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Galgal4.78.genome : Gallus_gallus
Galgal4.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
BROADS1.78.genome : Gasterosteus_aculeatus
BROADS1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
gorGor3.1.78.genome : Gorilla_gorilla
gorGor3.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
GRCh38.78.genome : Homo_sapiens
GRCh38.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
spetri2.78.genome : Ictidomys_tridecemlineatus
spetri2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
LatCha1.78.genome : Latimeria_chalumnae
LatCha1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
LepOcu1.78.genome : Lepisosteus_oculatus
LepOcu1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
loxAfr3.78.genome : Loxodonta_africana
loxAfr3.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
MMUL_1.78.genome : Macaca_mulatta
MMUL_1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Meug_1.0.78.genome : Macropus_eugenii
Meug_1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
UMD2.78.genome : Meleagris_gallopavo
UMD2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
micMur1.78.genome : Microcebus_murinus
micMur1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
BROADO5.78.genome : Monodelphis_domestica
BROADO5.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
GRCm38.78.genome : Mus_musculus
GRCm38.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
MusPutFur1.0.78.genome : Mustela_putorius_furo
MusPutFur1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Myoluc2.0.78.genome : Myotis_lucifugus
Myoluc2.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Nleu1.0.78.genome : Nomascus_leucogenys
Nleu1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
pika.78.genome : Ochotona_princeps
pika.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Orenil1.0.78.genome : Oreochromis_niloticus
Orenil1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
OANA5.78.genome : Ornithorhynchus_anatinus
OANA5.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
OryCun2.0.78.genome : Oryctolagus_cuniculus
OryCun2.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
MEDAKA1.78.genome : Oryzias_latipes
MEDAKA1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
OtoGar3.78.genome : Otolemur_garnettii
OtoGar3.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Oar_v3.1.78.genome : Ovis_aries
Oar_v3.1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
CHIMP2.1.4.78.genome : Pan_troglodytes
CHIMP2.1.4.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
PapAnu2.0.78.genome : Papio_anubis
PapAnu2.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
PelSin_1.0.78.genome : Pelodiscus_sinensis
PelSin_1.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Pmarinus_7.0.78.genome : Petromyzon_marinus
Pmarinus_7.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
PoeFor_5.1.2.78.genome : Poecilia_formosa
PoeFor_5.1.2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
PPYG2.78.genome : Pongo_abelii
PPYG2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
proCap1.78.genome : Procavia_capensis
proCap1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
pteVam1.78.genome : Pteropus_vampyrus
pteVam1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Rnor_5.0.78.genome : Rattus_norvegicus
Rnor_5.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
R64-1-1.78.genome : Saccharomyces_cerevisiae
R64-1-1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
DEVIL7.0.78.genome : Sarcophilus_harrisii
DEVIL7.0.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
COMMON_SHREW1.78.genome : Sorex_araneus
COMMON_SHREW1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Sscrofa10.2.78.genome : Sus_scrofa
Sscrofa10.2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
taeGut3.2.4.78.genome : Taeniopygia_guttata
taeGut3.2.4.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
FUGU4.78.genome : Takifugu_rubripes
FUGU4.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
tarSyr1.78.genome : Tarsius_syrichta
tarSyr1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
TETRAODON8.78.genome : Tetraodon_nigroviridis
TETRAODON8.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
TREESHREW.78.genome : Tupaia_belangeri
TREESHREW.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
turTru1.78.genome : Tursiops_truncatus
turTru1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
vicPac1.78.genome : Vicugna_pacos
vicPac1.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
JGI_4.2.78.genome : Xenopus_tropicalis
JGI_4.2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
Xipmac4.4.2.78.genome : Xiphophorus_maculatus
Xipmac4.4.2.78.reference : ftp://ftp.ensembl.org/pub/release-78/gtf/
config/snpEff.ENSEMBL_79.config deleted 100644 → 0
View file @ 19d693da
ailMel1.79.genome : Ailuropoda_melanoleuca
ailMel1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
BGI_duck_1.0.79.genome : Anas_platyrhynchos
BGI_duck_1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
AnoCar2.0.79.genome : Anolis_carolinensis
AnoCar2.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
AstMex102.79.genome : Astyanax_mexicanus
AstMex102.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
UMD3.1.79.genome : Bos_taurus
UMD3.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
WBcel235.79.genome : Caenorhabditis_elegans
WBcel235.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
C_jacchus3.2.1.79.genome : Callithrix_jacchus
C_jacchus3.2.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
CanFam3.1.79.genome : Canis_familiaris
CanFam3.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
cavPor3.79.genome : Cavia_porcellus
cavPor3.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
ChlSab1.1.79.genome : Chlorocebus_sabaeus
ChlSab1.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
choHof1.79.genome : Choloepus_hoffmanni
choHof1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
KH.79.genome : Ciona_intestinalis
KH.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
CSAV2.0.79.genome : Ciona_savignyi
CSAV2.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Zv9.79.genome : Danio_rerio
Zv9.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Dasnov3.0.79.genome : Dasypus_novemcinctus
Dasnov3.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
dipOrd1.79.genome : Dipodomys_ordii
dipOrd1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
BDGP6.79.genome : Drosophila_melanogaster
BDGP6.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
TENREC.79.genome : Echinops_telfairi
TENREC.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
EquCab2.79.genome : Equus_caballus
EquCab2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
HEDGEHOG.79.genome : Erinaceus_europaeus
HEDGEHOG.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Felis_catus_6.2.79.genome : Felis_catus
Felis_catus_6.2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
FicAlb_1.4.79.genome : Ficedula_albicollis
FicAlb_1.4.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
gadMor1.79.genome : Gadus_morhua
gadMor1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Galgal4.79.genome : Gallus_gallus
Galgal4.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
BROADS1.79.genome : Gasterosteus_aculeatus
BROADS1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
gorGor3.1.79.genome : Gorilla_gorilla
gorGor3.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
GRCh38.79.genome : Homo_sapiens
GRCh38.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
spetri2.79.genome : Ictidomys_tridecemlineatus
spetri2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
LatCha1.79.genome : Latimeria_chalumnae
LatCha1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
LepOcu1.79.genome : Lepisosteus_oculatus
LepOcu1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
loxAfr3.79.genome : Loxodonta_africana
loxAfr3.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
MMUL_1.79.genome : Macaca_mulatta
MMUL_1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Meug_1.0.79.genome : Macropus_eugenii
Meug_1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
UMD2.79.genome : Meleagris_gallopavo
UMD2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
micMur1.79.genome : Microcebus_murinus
micMur1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
BROADO5.79.genome : Monodelphis_domestica
BROADO5.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
GRCm38.79.genome : Mus_musculus
GRCm38.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
MusPutFur1.0.79.genome : Mustela_putorius_furo
MusPutFur1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Myoluc2.0.79.genome : Myotis_lucifugus
Myoluc2.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Nleu1.0.79.genome : Nomascus_leucogenys
Nleu1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
pika.79.genome : Ochotona_princeps
pika.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Orenil1.0.79.genome : Oreochromis_niloticus
Orenil1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
OANA5.79.genome : Ornithorhynchus_anatinus
OANA5.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
OryCun2.0.79.genome : Oryctolagus_cuniculus
OryCun2.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
MEDAKA1.79.genome : Oryzias_latipes
MEDAKA1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
OtoGar3.79.genome : Otolemur_garnettii
OtoGar3.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Oar_v3.1.79.genome : Ovis_aries
Oar_v3.1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
CHIMP2.1.4.79.genome : Pan_troglodytes
CHIMP2.1.4.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
PapAnu2.0.79.genome : Papio_anubis
PapAnu2.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
PelSin_1.0.79.genome : Pelodiscus_sinensis
PelSin_1.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Pmarinus_7.0.79.genome : Petromyzon_marinus
Pmarinus_7.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
PoeFor_5.1.2.79.genome : Poecilia_formosa
PoeFor_5.1.2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
PPYG2.79.genome : Pongo_abelii
PPYG2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
proCap1.79.genome : Procavia_capensis
proCap1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
pteVam1.79.genome : Pteropus_vampyrus
pteVam1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Rnor_5.0.79.genome : Rattus_norvegicus
Rnor_5.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
R64-1-1.79.genome : Saccharomyces_cerevisiae
R64-1-1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
DEVIL7.0.79.genome : Sarcophilus_harrisii
DEVIL7.0.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
COMMON_SHREW1.79.genome : Sorex_araneus
COMMON_SHREW1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Sscrofa10.2.79.genome : Sus_scrofa
Sscrofa10.2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
taeGut3.2.4.79.genome : Taeniopygia_guttata
taeGut3.2.4.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
FUGU4.79.genome : Takifugu_rubripes
FUGU4.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
tarSyr1.79.genome : Tarsius_syrichta
tarSyr1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
TETRAODON8.79.genome : Tetraodon_nigroviridis
TETRAODON8.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
TREESHREW.79.genome : Tupaia_belangeri
TREESHREW.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
turTru1.79.genome : Tursiops_truncatus
turTru1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
vicPac1.79.genome : Vicugna_pacos
vicPac1.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
JGI_4.2.79.genome : Xenopus_tropicalis
JGI_4.2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
Xipmac4.4.2.79.genome : Xiphophorus_maculatus
Xipmac4.4.2.79.reference : ftp://ftp.ensembl.org/pub/release-79/gtf/
config/snpEff.ENSEMBL_81.config deleted 100644 → 0
View file @ 19d693da
ailMel1.81.genome : Ailuropoda_melanoleuca
ailMel1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
BGI_duck_1.0.81.genome : Anas_platyrhynchos
BGI_duck_1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
AnoCar2.0.81.genome : Anolis_carolinensis
AnoCar2.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
AstMex102.81.genome : Astyanax_mexicanus
AstMex102.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
UMD3.1.81.genome : Bos_taurus
UMD3.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
WBcel235.81.genome : Caenorhabditis_elegans
WBcel235.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
C_jacchus3.2.1.81.genome : Callithrix_jacchus
C_jacchus3.2.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
CanFam3.1.81.genome : Canis_familiaris
CanFam3.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
cavPor3.81.genome : Cavia_porcellus
cavPor3.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
ChlSab1.1.81.genome : Chlorocebus_sabaeus
ChlSab1.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
choHof1.81.genome : Choloepus_hoffmanni
choHof1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
KH.81.genome : Ciona_intestinalis
KH.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
CSAV2.0.81.genome : Ciona_savignyi
CSAV2.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
GRCz10.81.genome : Danio_rerio
GRCz10.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Dasnov3.0.81.genome : Dasypus_novemcinctus
Dasnov3.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
dipOrd1.81.genome : Dipodomys_ordii
dipOrd1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
BDGP6.81.genome : Drosophila_melanogaster
BDGP6.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
TENREC.81.genome : Echinops_telfairi
TENREC.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
EquCab2.81.genome : Equus_caballus
EquCab2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
HEDGEHOG.81.genome : Erinaceus_europaeus
HEDGEHOG.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Felis_catus_6.2.81.genome : Felis_catus
Felis_catus_6.2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
FicAlb_1.4.81.genome : Ficedula_albicollis
FicAlb_1.4.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
gadMor1.81.genome : Gadus_morhua
gadMor1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Galgal4.81.genome : Gallus_gallus
Galgal4.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
BROADS1.81.genome : Gasterosteus_aculeatus
BROADS1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
gorGor3.1.81.genome : Gorilla_gorilla
gorGor3.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
GRCh38.81.genome : Homo_sapiens
GRCh38.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
spetri2.81.genome : Ictidomys_tridecemlineatus
spetri2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
LatCha1.81.genome : Latimeria_chalumnae
LatCha1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
LepOcu1.81.genome : Lepisosteus_oculatus
LepOcu1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
loxAfr3.81.genome : Loxodonta_africana
loxAfr3.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
MMUL_1.81.genome : Macaca_mulatta
MMUL_1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Meug_1.0.81.genome : Macropus_eugenii
Meug_1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
UMD2.81.genome : Meleagris_gallopavo
UMD2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
micMur1.81.genome : Microcebus_murinus
micMur1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
BROADO5.81.genome : Monodelphis_domestica
BROADO5.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
GRCm38.81.genome : Mus_musculus
GRCm38.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
MusPutFur1.0.81.genome : Mustela_putorius_furo
MusPutFur1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Myoluc2.0.81.genome : Myotis_lucifugus
Myoluc2.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Nleu1.0.81.genome : Nomascus_leucogenys
Nleu1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
pika.81.genome : Ochotona_princeps
pika.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Orenil1.0.81.genome : Oreochromis_niloticus
Orenil1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
OANA5.81.genome : Ornithorhynchus_anatinus
OANA5.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
OryCun2.0.81.genome : Oryctolagus_cuniculus
OryCun2.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
MEDAKA1.81.genome : Oryzias_latipes
MEDAKA1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
OtoGar3.81.genome : Otolemur_garnettii
OtoGar3.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Oar_v3.1.81.genome : Ovis_aries
Oar_v3.1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
CHIMP2.1.4.81.genome : Pan_troglodytes
CHIMP2.1.4.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
PapAnu2.0.81.genome : Papio_anubis
PapAnu2.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
PelSin_1.0.81.genome : Pelodiscus_sinensis
PelSin_1.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Pmarinus_7.0.81.genome : Petromyzon_marinus
Pmarinus_7.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
PoeFor_5.1.2.81.genome : Poecilia_formosa
PoeFor_5.1.2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
PPYG2.81.genome : Pongo_abelii
PPYG2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
proCap1.81.genome : Procavia_capensis
proCap1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
pteVam1.81.genome : Pteropus_vampyrus
pteVam1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Rnor_6.0.81.genome : Rattus_norvegicus
Rnor_6.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
R64-1-1.81.genome : Saccharomyces_cerevisiae
R64-1-1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
DEVIL7.0.81.genome : Sarcophilus_harrisii
DEVIL7.0.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
COMMON_SHREW1.81.genome : Sorex_araneus
COMMON_SHREW1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Sscrofa10.2.81.genome : Sus_scrofa
Sscrofa10.2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
taeGut3.2.4.81.genome : Taeniopygia_guttata
taeGut3.2.4.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
FUGU4.81.genome : Takifugu_rubripes
FUGU4.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
tarSyr1.81.genome : Tarsius_syrichta
tarSyr1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
TETRAODON8.81.genome : Tetraodon_nigroviridis
TETRAODON8.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
TREESHREW.81.genome : Tupaia_belangeri
TREESHREW.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
turTru1.81.genome : Tursiops_truncatus
turTru1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
vicPac1.81.genome : Vicugna_pacos
vicPac1.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
JGI_4.2.81.genome : Xenopus_tropicalis
JGI_4.2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
Xipmac4.4.2.81.genome : Xiphophorus_maculatus
Xipmac4.4.2.81.reference : ftp://ftp.ensembl.org/pub/release-81/gtf/
\ No newline at end of file
config/snpEff.ENSEMBL_82.config deleted 100644 → 0
View file @ 19d693da
ailMel1.82.genome : Ailuropoda_melanoleuca
ailMel1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
BGI_duck_1.0.82.genome : Anas_platyrhynchos
BGI_duck_1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
AnoCar2.0.82.genome : Anolis_carolinensis
AnoCar2.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
AstMex102.82.genome : Astyanax_mexicanus
AstMex102.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
UMD3.1.82.genome : Bos_taurus
UMD3.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
WBcel235.82.genome : Caenorhabditis_elegans
WBcel235.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
C_jacchus3.2.1.82.genome : Callithrix_jacchus
C_jacchus3.2.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
CanFam3.1.82.genome : Canis_familiaris
CanFam3.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
cavPor3.82.genome : Cavia_porcellus
cavPor3.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
ChlSab1.1.82.genome : Chlorocebus_sabaeus
ChlSab1.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
choHof1.82.genome : Choloepus_hoffmanni
choHof1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
KH.82.genome : Ciona_intestinalis
KH.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
CSAV2.0.82.genome : Ciona_savignyi
CSAV2.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
GRCz10.82.genome : Danio_rerio
GRCz10.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Dasnov3.0.82.genome : Dasypus_novemcinctus
Dasnov3.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
dipOrd1.82.genome : Dipodomys_ordii
dipOrd1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
BDGP6.82.genome : Drosophila_melanogaster
BDGP6.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
TENREC.82.genome : Echinops_telfairi
TENREC.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
EquCab2.82.genome : Equus_caballus
EquCab2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
HEDGEHOG.82.genome : Erinaceus_europaeus
HEDGEHOG.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Felis_catus_6.2.82.genome : Felis_catus
Felis_catus_6.2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
FicAlb_1.4.82.genome : Ficedula_albicollis
FicAlb_1.4.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
gadMor1.82.genome : Gadus_morhua
gadMor1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Galgal4.82.genome : Gallus_gallus
Galgal4.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
BROADS1.82.genome : Gasterosteus_aculeatus
BROADS1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
gorGor3.1.82.genome : Gorilla_gorilla
gorGor3.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
GRCh38.82.genome : Homo_sapiens
GRCh38.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
spetri2.82.genome : Ictidomys_tridecemlineatus
spetri2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
LatCha1.82.genome : Latimeria_chalumnae
LatCha1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
LepOcu1.82.genome : Lepisosteus_oculatus
LepOcu1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
loxAfr3.82.genome : Loxodonta_africana
loxAfr3.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
MMUL_1.82.genome : Macaca_mulatta
MMUL_1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Meug_1.0.82.genome : Macropus_eugenii
Meug_1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
UMD2.82.genome : Meleagris_gallopavo
UMD2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
micMur1.82.genome : Microcebus_murinus
micMur1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
BROADO5.82.genome : Monodelphis_domestica
BROADO5.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
GRCm38.82.genome : Mus_musculus
GRCm38.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
MusPutFur1.0.82.genome : Mustela_putorius_furo
MusPutFur1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Myoluc2.0.82.genome : Myotis_lucifugus
Myoluc2.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Nleu1.0.82.genome : Nomascus_leucogenys
Nleu1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
pika.82.genome : Ochotona_princeps
pika.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Orenil1.0.82.genome : Oreochromis_niloticus
Orenil1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
OANA5.82.genome : Ornithorhynchus_anatinus
OANA5.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
OryCun2.0.82.genome : Oryctolagus_cuniculus
OryCun2.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
MEDAKA1.82.genome : Oryzias_latipes
MEDAKA1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
OtoGar3.82.genome : Otolemur_garnettii
OtoGar3.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Oar_v3.1.82.genome : Ovis_aries
Oar_v3.1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
CHIMP2.1.4.82.genome : Pan_troglodytes
CHIMP2.1.4.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
PapAnu2.0.82.genome : Papio_anubis
PapAnu2.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
PelSin_1.0.82.genome : Pelodiscus_sinensis
PelSin_1.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Pmarinus_7.0.82.genome : Petromyzon_marinus
Pmarinus_7.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
PoeFor_5.1.2.82.genome : Poecilia_formosa
PoeFor_5.1.2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
PPYG2.82.genome : Pongo_abelii
PPYG2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
proCap1.82.genome : Procavia_capensis
proCap1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
pteVam1.82.genome : Pteropus_vampyrus
pteVam1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Rnor_6.0.82.genome : Rattus_norvegicus
Rnor_6.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
R64-1-1.82.genome : Saccharomyces_cerevisiae
R64-1-1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
DEVIL7.0.82.genome : Sarcophilus_harrisii
DEVIL7.0.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
COMMON_SHREW1.82.genome : Sorex_araneus
COMMON_SHREW1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Sscrofa10.2.82.genome : Sus_scrofa
Sscrofa10.2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
taeGut3.2.4.82.genome : Taeniopygia_guttata
taeGut3.2.4.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
FUGU4.82.genome : Takifugu_rubripes
FUGU4.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
tarSyr1.82.genome : Tarsius_syrichta
tarSyr1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
TETRAODON8.82.genome : Tetraodon_nigroviridis
TETRAODON8.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
TREESHREW.82.genome : Tupaia_belangeri
TREESHREW.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
turTru1.82.genome : Tursiops_truncatus
turTru1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
vicPac1.82.genome : Vicugna_pacos
vicPac1.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
JGI_4.2.82.genome : Xenopus_tropicalis
JGI_4.2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
Xipmac4.4.2.82.genome : Xiphophorus_maculatus
Xipmac4.4.2.82.reference : ftp://ftp.ensembl.org/pub/release-82/gtf/
\ No newline at end of file
config/snpEff.ENSEMBL_85.config 0 → 100644
View file @ 68f06f44
ailMel1.85.genome : Ailuropoda_melanoleuca
ailMel1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
BGI_duck_1.0.85.genome : Anas_platyrhynchos
BGI_duck_1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
AnoCar2.0.85.genome : Anolis_carolinensis
AnoCar2.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
AstMex102.85.genome : Astyanax_mexicanus
AstMex102.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
UMD3.1.85.genome : Bos_taurus
UMD3.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
WBcel235.85.genome : Caenorhabditis_elegans
WBcel235.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
C_jacchus3.2.1.85.genome : Callithrix_jacchus
C_jacchus3.2.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
CanFam3.1.85.genome : Canis_familiaris
CanFam3.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
cavPor3.85.genome : Cavia_porcellus
cavPor3.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
ChlSab1.1.85.genome : Chlorocebus_sabaeus
ChlSab1.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
choHof1.85.genome : Choloepus_hoffmanni
choHof1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
KH.85.genome : Ciona_intestinalis
KH.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
CSAV2.0.85.genome : Ciona_savignyi
CSAV2.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
GRCz10.85.genome : Danio_rerio
GRCz10.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Dasnov3.0.85.genome : Dasypus_novemcinctus
Dasnov3.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
dipOrd1.85.genome : Dipodomys_ordii
dipOrd1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
BDGP6.85.genome : Drosophila_melanogaster
BDGP6.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
TENREC.85.genome : Echinops_telfairi
TENREC.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
EquCab2.85.genome : Equus_caballus
EquCab2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
HEDGEHOG.85.genome : Erinaceus_europaeus
HEDGEHOG.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Felis_catus_6.2.85.genome : Felis_catus
Felis_catus_6.2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
FicAlb_1.4.85.genome : Ficedula_albicollis
FicAlb_1.4.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
gadMor1.85.genome : Gadus_morhua
gadMor1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Galgal4.85.genome : Gallus_gallus
Galgal4.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
BROADS1.85.genome : Gasterosteus_aculeatus
BROADS1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
gorGor3.1.85.genome : Gorilla_gorilla
gorGor3.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
GRCh38.85.genome : Homo_sapiens
GRCh38.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
spetri2.85.genome : Ictidomys_tridecemlineatus
spetri2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
LatCha1.85.genome : Latimeria_chalumnae
LatCha1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
LepOcu1.85.genome : Lepisosteus_oculatus
LepOcu1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
loxAfr3.85.genome : Loxodonta_africana
loxAfr3.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
MMUL_1.85.genome : Macaca_mulatta
MMUL_1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Meug_1.0.85.genome : Macropus_eugenii
Meug_1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
UMD2.85.genome : Meleagris_gallopavo
UMD2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
micMur1.85.genome : Microcebus_murinus
micMur1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
BROADO5.85.genome : Monodelphis_domestica
BROADO5.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
GRCm38.85.genome : Mus_musculus
GRCm38.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
MusPutFur1.0.85.genome : Mustela_putorius_furo
MusPutFur1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Myoluc2.0.85.genome : Myotis_lucifugus
Myoluc2.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Nleu1.0.85.genome : Nomascus_leucogenys
Nleu1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
pika.85.genome : Ochotona_princeps
pika.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Orenil1.0.85.genome : Oreochromis_niloticus
Orenil1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
OANA5.85.genome : Ornithorhynchus_anatinus
OANA5.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
OryCun2.0.85.genome : Oryctolagus_cuniculus
OryCun2.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
MEDAKA1.85.genome : Oryzias_latipes
MEDAKA1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
OtoGar3.85.genome : Otolemur_garnettii
OtoGar3.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Oar_v3.1.85.genome : Ovis_aries
Oar_v3.1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
CHIMP2.1.4.85.genome : Pan_troglodytes
CHIMP2.1.4.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
PapAnu2.0.85.genome : Papio_anubis
PapAnu2.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
PelSin_1.0.85.genome : Pelodiscus_sinensis
PelSin_1.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Pmarinus_7.0.85.genome : Petromyzon_marinus
Pmarinus_7.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
PoeFor_5.1.2.85.genome : Poecilia_formosa
PoeFor_5.1.2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
PPYG2.85.genome : Pongo_abelii
PPYG2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
proCap1.85.genome : Procavia_capensis
proCap1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
pteVam1.85.genome : Pteropus_vampyrus
pteVam1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Rnor_6.0.85.genome : Rattus_norvegicus
Rnor_6.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
R64-1-1.85.genome : Saccharomyces_cerevisiae
R64-1-1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
DEVIL7.0.85.genome : Sarcophilus_harrisii
DEVIL7.0.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
COMMON_SHREW1.85.genome : Sorex_araneus
COMMON_SHREW1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Sscrofa10.2.85.genome : Sus_scrofa
Sscrofa10.2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
taeGut3.2.4.85.genome : Taeniopygia_guttata
taeGut3.2.4.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
FUGU4.85.genome : Takifugu_rubripes
FUGU4.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
tarSyr1.85.genome : Tarsius_syrichta
tarSyr1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
TETRAODON8.85.genome : Tetraodon_nigroviridis
TETRAODON8.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
TREESHREW.85.genome : Tupaia_belangeri
TREESHREW.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
turTru1.85.genome : Tursiops_truncatus
turTru1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
vicPac1.85.genome : Vicugna_pacos
vicPac1.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
JGI_4.2.85.genome : Xenopus_tropicalis
JGI_4.2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
Xipmac4.4.2.85.genome : Xiphophorus_maculatus
Xipmac4.4.2.85.reference : ftp://ftp.ensembl.org/pub/release-85/gtf/
\ No newline at end of file
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config/snpEff.ENSEMBL_BFMPP_32.config 0 → 100644
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config/snpEff.FLYBASE_FB2015_05.config deleted 100644 → 0
View file @ 19d693da
dana_r1.04.genome : dana_r1.04
dana_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dana_r1.04/gff/dana-all-r1.04.gff.gz
dere_r1.04.genome : dere_r1.04
dere_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dere_r1.04/gff/dere-all-r1.04.gff.gz
dgri_r1.3.genome : dgri_r1.3
dgri_r1.3.reference : ftp://ftp.flybase.net/releases/FB2015_05/dgri_r1.3/gff/dgri-all-r1.3.gff.gz
dmel_r6.08.genome : dmel_r6.08
dmel_r6.08.reference : ftp://ftp.flybase.net/releases/FB2015_05/dmel_r6.08/gff/dmel-all-r6.08.gff.gz
dmoj_r1.04.genome : dmoj_r1.04
dmoj_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dmoj_r1.04/gff/dmoj-all-r1.04.gff.gz
dper_r1.3.genome : dper_r1.3
dper_r1.3.reference : ftp://ftp.flybase.net/releases/FB2015_05/dper_r1.3/gff/dper-all-r1.3.gff.gz
dpse_r3.03.genome : dpse_r3.03
dpse_r3.03.reference : ftp://ftp.flybase.net/releases/FB2015_05/dpse_r3.03/gff/dpse-all-r3.03.gff.gz
dsec_r1.3.genome : dsec_r1.3
dsec_r1.3.reference : ftp://ftp.flybase.net/releases/FB2015_05/dsec_r1.3/gff/dsec-all-r1.3.gff.gz
dsim_r2.01.genome : dsim_r2.01
dsim_r2.01.reference : ftp://ftp.flybase.net/releases/FB2015_05/dsim_r2.01/gff/dsim-all-r2.01.gff.gz
dvir_r1.04.genome : dvir_r1.04
dvir_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dvir_r1.04/gff/dvir-all-r1.04.gff.gz
dwil_r1.04.genome : dwil_r1.04
dwil_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dwil_r1.04/gff/dwil-all-r1.04.gff.gz
dyak_r1.04.genome : dyak_r1.04
dyak_r1.04.reference : ftp://ftp.flybase.net/releases/FB2015_05/dyak_r1.04/gff/dyak-all-r1.04.gff.gz
\ No newline at end of file
config/snpEff.FLYBASE_FB2016_04.config 0 → 100644
View file @ 68f06f44
dana_r1.05.genome : dana_r1.05
dana_r1.05.reference : ftp://ftp.flybase.net/releases/FB2016_04/dana_r1.05/gff/dana-all-r1.05.gff.gz
dere_r1.05.genome : dere_r1.05
dere_r1.05.reference : ftp://ftp.flybase.net/releases/FB2016_04/dere_r1.05/gff/dere-all-r1.05.gff.gz
dgri_r1.3.genome : dgri_r1.3
dgri_r1.3.reference : ftp://ftp.flybase.net/releases/FB2016_04/dgri_r1.3/gff/dgri-all-r1.3.gff.gz
dmel_r6.12.genome : dmel_r6.12
dmel_r6.12.reference : ftp://ftp.flybase.net/releases/FB2016_04/dmel_r6.12/gff/dmel-all-r6.12.gff.gz
dmoj_r1.04.genome : dmoj_r1.04
dmoj_r1.04.reference : ftp://ftp.flybase.net/releases/FB2016_04/dmoj_r1.04/gff/dmoj-all-r1.04.gff.gz
dper_r1.3.genome : dper_r1.3
dper_r1.3.reference : ftp://ftp.flybase.net/releases/FB2016_04/dper_r1.3/gff/dper-all-r1.3.gff.gz
dpse_r3.04.genome : dpse_r3.04
dpse_r3.04.reference : ftp://ftp.flybase.net/releases/FB2016_04/dpse_r3.04/gff/dpse-all-r3.04.gff.gz
dsec_r1.3.genome : dsec_r1.3
dsec_r1.3.reference : ftp://ftp.flybase.net/releases/FB2016_04/dsec_r1.3/gff/dsec-all-r1.3.gff.gz
dsim_r2.02.genome : dsim_r2.02
dsim_r2.02.reference : ftp://ftp.flybase.net/releases/FB2016_04/dsim_r2.02/gff/dsim-all-r2.02.gff.gz
dvir_r1.06.genome : dvir_r1.06
dvir_r1.06.reference : ftp://ftp.flybase.net/releases/FB2016_04/dvir_r1.06/gff/dvir-all-r1.06.gff.gz
dwil_r1.05.genome : dwil_r1.05
dwil_r1.05.reference : ftp://ftp.flybase.net/releases/FB2016_04/dwil_r1.05/gff/dwil-all-r1.05.gff.gz
dyak_r1.05.genome : dyak_r1.05
dyak_r1.05.reference : ftp://ftp.flybase.net/releases/FB2016_04/dyak_r1.05/gff/dyak-all-r1.05.gff.gz
\ No newline at end of file
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config/snpEff.dbs.config
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......@@ -87,10 +87,6 @@ c_briggsae_WS230.reference : ftp://ftp.wormbase.org/pub/wormbase/releases/WS230/
c_remanei_WS234.genome : Caenorhabditis_briggsae
c_remanei_WS234.reference : ftp://ftp.wormbase.org/pub/wormbase/releases/WS234/species/c_remanei/
# Cryptococcus neoformans
c_neoformans.genome: Cryptococcus_neoformans
c_neoformans.reference: http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiDownloads.html
# Camelus ferus
camelus_ferus.genome : Camelus ferus
camelus_ferus.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Camelus_ferus/
......
config/snpEff.test.config
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......@@ -34,6 +34,7 @@ testHg19Chr21.genome : testHg19Chr21
testHg19Chr22.genome : testHg19Chr22
testHg19ChrX.genome : testHg19ChrX
testHg19ChrY.genome : testHg19ChrY
testHg19Pdb.genome : testHg19Pdb
testHg19Hgvs.genome : testHg19Hgvs
......@@ -116,6 +117,7 @@ testAP.genome : Test test_Adrian_Platts_vegi_genome
testMaizeZmB73.genome : Test MaizeZmB73
testMacuminata.genome : Test macuminata_v2.180614
testChromoNamesDoNotMatch.genome: Test for genes not matching between GFF and FASTA
testMita.genome : Test Tetranychus urticae
testMycobacterium_tuberculosis_CCDC5079_uid203790.genome : Test for Mycobacterium_tuberculosis_CCDC5079_uid203790
#---
......@@ -123,6 +125,8 @@ testMycobacterium_tuberculosis_CCDC5079_uid203790.genome : Test for Mycobacteriu
#---
test_circular_GCA_000210475.1.22.genome : test_circular_GCA_000210475.1.22
test_circular_GCA_000210475.1.22_end.genome : test_circular_GCA_000210475.1.22_end
test_Acetobacter_pasteurianus.genome: test_Acetobacter_pasteurianus
test_Campylobacter_fetus_subsp_venerealis_nctc_10354.genome: test_Campylobacter_fetus_subsp_venerealis_nctc_10354
#---
# Genom-wide Codon table setting test case
......