debian/changelog

-sortmerna (2.1-3) UNRELEASED; urgency=medium
+sortmerna (2.1-3) unstable; urgency=medium
 
+  [ Steffen Moeller ]
   * debian/upstream/metadata
     - added references to registries
     - yamllint cleanliness
 
- -- Steffen Moeller <moeller@debian.org>  Mon, 25 Sep 2017 15:10:19 +0200
+  [ Andreas Tille ]
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille <tille@debian.org>  Tue, 09 Oct 2018 17:26:27 +0200
 
 sortmerna (2.1-2) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -4,10 +4,10 @@ Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.0
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sortmerna.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/sortmerna.git
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/sortmerna
+Vcs-Git: https://salsa.debian.org/med-team/sortmerna.git
 Homepage: http://bioinfo.lifl.fr/RNA/sortmerna/
 
 Package: sortmerna

debian/patches/fix-interpreter-lines

---- a/rRNA_databases/scripts/edit_U_to_T_rna.py
-+++ b/rRNA_databases/scripts/edit_U_to_T_rna.py
-@@ -1,3 +1,4 @@
-+#!/usr/bin/env python
- # requires scikit bio [http://scikit-bio.org]
- 
- from skbio.parse.sequences import parse_fasta
---- a/rRNA_databases/scripts/generate_databases.sh
-+++ b/rRNA_databases/scripts/generate_databases.sh
-@@ -9,4 +9,4 @@
- do
-     echo "sumaclust -l -p 40 -t ${id[i]} -F $rootdir/step4-c/${reference_db[i]} $rootdir/${reference_db[i]}"
-     echo "sumaclust -l -p 40 -t ${id[i]} -F $rootdir/step4-c/${reference_db[i]} $rootdir/${reference_db[i]}" | qsub -l nodes=1:ppn=40 -q mem4gbq -k oe -N ${db}_sumaclust; sleep 2
--done
-\ No newline at end of file
-+done