debian/changelog

-spades (3.13.1+dfsg-1) UNRELEASED; urgency=medium
+spades (3.13.1+dfsg-1) unstable; urgency=medium
 
   * Fix watch file
   * Moved packaging to Python3
@@ -13,7 +13,7 @@ spades (3.13.1+dfsg-1) UNRELEASED; urgency=medium
   * Drop webvis dir from source which has compressed JS but its not used
     in the binary package
 
- -- Andreas Tille <tille@debian.org>  Tue, 08 Oct 2019 18:17:07 +0200
+ -- Andreas Tille <tille@debian.org>  Mon, 18 Nov 2019 15:34:43 +0100
 
 spades (3.13.0+dfsg2-2) unstable; urgency=medium
 

debian/patches/python3.patch

@@ -1170,3 +1170,14 @@ Description: Make sure Python3 interpreter is used in scripts
  #src/tools/dataset_hammer /mnt/ace/acestorage/snikolenko/090408_ultrashort/09
  #src/tools/dataset_hammer /mnt/ace/acestorage/data/input/x5/makarich.fbb.msu.ru/run1_fca/Quaked/
  #src/tools/dataset_hammer ~/temp/02
+--- a/assembler/src/spades_pipeline/truspades/generate_quality.py
++++ b/assembler/src/spades_pipeline/truspades/generate_quality.py
+@@ -52,7 +52,7 @@ def CountContigQuality(contigs, qual):
+         for pos in range(len(contigs[i])):
+             q = qual[i][pos]
+             if q[1] != 0:
+-                qual_list[pos] = chr(q[0] / q[1])
++                qual_list[pos] = chr(q[0] // q[1])
+             else:
+                 cnt += 1
+         contigs[i].qual = "".join(qual_list)