debian/patches/python3.patch

@@ -120,7 +120,7 @@ Description: Make sure Python3 interpreter is used in scripts
              with open(cfg_file) as infile:
                  for line in infile:
 -                    for src, target in replacements.iteritems():
-+                    for src, target in list(replacements.iteritems()):
++                    for src, target in replacements.items():
                          line = line.replace(src, target)
                      lines.append(line)
              with open(cfg_file, 'w') as outfile:
@@ -129,7 +129,7 @@ Description: Make sure Python3 interpreter is used in scripts
              with open(cfg_file) as infile:
                  for line in infile:
 -                    for src, target in replacements.iteritems():
-+                    for src, target in list(replacements.iteritems()):
++                    for src, target in replacements.items():
                          line = line.replace(src, target)
                      lines.append(line)
              with open(cfg_file, 'w') as outfile:

debian/patches/yaml_load.patch

@@ -10,7 +10,7 @@ Description: Specify yaml loader
  
          log.info("  Reads:")
 -        dataset_data = pyyaml.load(open(cfg["dataset"].yaml_filename, 'r'))
-+        dataset_data = pyyaml.load(open(cfg["dataset"].yaml_filename, 'r'), Loader=yaml.FullLoader)
++        dataset_data = pyyaml.load(open(cfg["dataset"].yaml_filename, 'r'), Loader=pyyaml.FullLoader)
          dataset_data = support.relative2abs_paths(dataset_data, os.path.dirname(cfg["dataset"].yaml_filename))
          support.pretty_print_reads(dataset_data, log)