Initial packaging

spoa (1.1.3-1) UNRELEASED; urgency=medium

  * Initial release (Closes: #xxx)

 -- Andreas Tille <tille@debian.org>  Fri, 08 Jun 2018 13:20:51 +0200

11

Source: spoa

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Andreas Tille <tille@debian.org>

Section: science

Priority: optional

Build-Depends: debhelper (>= 11~),

               cmake,

               libbioparser-dev

Standards-Version: 4.1.4

Vcs-Browser: https://salsa.debian.org/med-team/spoa

Vcs-Git: https://salsa.debian.org/med-team/spoa.git

Homepage: https://github.com/rvaser/spoa

Package: spoa

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: SIMD partial order alignment tool/library

 Spoa (SIMD POA) is a c++ implementation of the partial order alignment

 (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which

 is used to generate consensus sequences (as described in

 10.1093/bioinformatics/btg109). It supports three alignment modes: local

 (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment

 (overlap).

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

Upstream-Name: Spoa

Upstream-Contact: 

Source: https://github.com/rvaser/spoa/releases

Files: *

Copyright: 2016-2018 Robert Vaser

License: MIT

Files: debian/*

Copyright: 2018 Andreas Tille <tille@debian.org>

License: MIT

License: MIT

 Permission is hereby granted, free of charge, to any person obtaining a copy

 of this software and associated documentation files (the "Software"), to deal

 in the Software without restriction, including without limitation the rights

 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell

 copies of the Software, and to permit persons to whom the Software is

 furnished to do so, subject to the following conditions:

 .

 The above copyright notice and this permission notice shall be included in all

 copies or substantial portions of the Software.

 .

 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR

 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,

 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE

 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER

 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,

 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE

 SOFTWARE.

use_debian_packaged_libs.patch