debian/changelog

+spoa (1.1.3-3) unstable; urgency=medium
+
+  * Do not build with -march
+    Closes: #911970
+  * Remove trailing whitespace in debian/copyright
+  * Mark two symbols as optional
+
+ -- Andreas Tille <tille@debian.org>  Sat, 03 Nov 2018 07:38:44 +0100
+
 spoa (1.1.3-2) unstable; urgency=medium
 
   * Fix symbols file

debian/libspoa1.1.3.symbols

@@ -3,11 +3,11 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZN4spoa15AlignmentEngine25align_sequence_with_graphERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt10unique_ptrINS_5GraphESt14default_deleteISA_EE@Base 1.1.3
  _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3
  _ZN4spoa15AlignmentEngineC2ENS_13AlignmentTypeEaaa@Base 1.1.3
- _ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3
- _ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3
+ (optional)_ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3
+ (optional)_ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3
  _ZN4spoa19SimdAlignmentEngine25align_sequence_with_graphEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3
- _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3
- _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3
+ (optional)_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3
+ (optional)_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3
  _ZN4spoa19SimdAlignmentEngine7reallocEjjj@Base 1.1.3
  _ZN4spoa19SimdAlignmentEngine8preallocEjj@Base 1.1.3
  _ZN4spoa19SimdAlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3
@@ -85,17 +85,17 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3
  _ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.3
  _ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3
+ (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3
+ (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3
+ (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.3
  _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3
  _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3
  _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3
+ (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3
+ (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3
  _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1.3
  _ZTIN4spoa15AlignmentEngineE@Base 1.1.3

debian/patches/no_march.patch

+Description: Do not build with -march
+Bug-Debian: https://bugs.debian.org/911970
+Author: Andreas Tille <tille@debian.org>
+Last-Update: Sat, 03 Nov 2018 07:20:26 +0100
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -7,7 +7,7 @@ set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PRO
+ set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
+ set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin)
+ 
+-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -pedantic -march=native")
++set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -pedantic")
+ set(CMAKE_CXX_STANDARD 11)
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
+ set(CMAKE_CXX_EXTENSIONS OFF)

debian/patches/series

 use_debian_packaged_libs.patch
 shared_and_static.patch
+no_march.patch