debian/README.test

+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.

debian/changelog

+spoa (1.1.3-2) unstable; urgency=medium
+
+  * Fix symbols file
+    Closes: #905387
+  * Standards-Version: 4.2.1
+  * Add build-time test
+  * Add autopkgtest
+
+ -- Andreas Tille <tille@debian.org>  Fri, 19 Oct 2018 09:04:34 +0200
+
 spoa (1.1.3-1) unstable; urgency=medium
 
   * Initial release (Closes: #901145)

debian/control

@@ -9,8 +9,8 @@ Build-Depends: debhelper (>= 11~),
                rename,
                libbioparser-dev,
                libgtest-dev,
-               zlib1g-dev (>= 1.2.11~)
-Standards-Version: 4.1.4
+               zlib1g-dev
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/spoa
 Vcs-Git: https://salsa.debian.org/med-team/spoa.git
 Homepage: https://github.com/rvaser/spoa

debian/libspoa1.1.3.symbols

@@ -66,8 +66,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZNK4spoa5Graph23is_topologically_sortedEv@Base 1.1.3
  _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base 1.1.3
  _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3
- _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base 1.1.3
- _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 1.1.3
+ _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3
@@ -89,6 +88,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3
+ _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.3
  _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3
  _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3
  _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3

debian/rules

@@ -24,3 +24,9 @@ override_dh_install:
 		    --movedev debian/tmp/usr/include/* usr/include \
 		    --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/$(DEB_HOST_MULTIARCH) \
 		    debian/tmp/usr/lib/*/*.so
+
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	`find . -name spoa_test`
+	`find . -name spoa | grep bin` test/data/sample.fastq
+endif

debian/spoa.docs

+debian/tests/run-unit-test

debian/spoa.examples

+test/data/*

debian/tests/control

+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

debian/tests/run-unit-test

+#!/bin/bash
+set -e
+
+pkg=spoa
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+gunzip -r *
+
+spoa sample.fastq