debian/changelog

+sprai (0.9.9.23+dfsg-2) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.3.0
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/copyright
+  * Fix Perl interpreter path
+
+ -- Andreas Tille <tille@debian.org>  Mon, 07 Jan 2019 13:20:54 +0100
+
 sprai (0.9.9.23+dfsg-1) unstable; urgency=medium
 
   * New upstream version

debian/compat

-9
+11

debian/control

 Source: sprai
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif@debian.org>
-Build-Depends:
-	debhelper (>= 9),
-	python,
-Standards-Version: 4.1.3
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+               python
+Standards-Version: 4.3.0
+Vcs-Browser: https://salsa.debian.org/med-team/sprai
+Vcs-Git: https://salsa.debian.org/med-team/sprai.git
 Homepage: http://zombie.cb.k.u-tokyo.ac.jp/sprai/index.html
-Vcs-Git: https://anonscm.debian.org/git/debian-med/sprai.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sprai.git
 
 Package: sprai
 Architecture: any
-Depends:
-	${shlibs:Depends},
+Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${perl:Depends},
          ncbi-blast+ (>= 2.2.27),
-	time,
-Suggests:
-	pbh5tools,
+         time
+Suggests: pbh5tools,
           pbgenomicconsensus,
           pbalign,
-	make,
+          make
 Description: single-pass sequencing read accuracy improver
  Sprai is a tool to correct sequencing errors in single-pass reads for
  de novo assembly. It is originally designed for correcting sequencing

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: sprai
 Upstream-Contact: Takamasa Imai <sprai2017@gmail.com>
 Source: http://zombie.cb.k.u-tokyo.ac.jp/sprai/Download.html

debian/rules

@@ -30,6 +30,9 @@ override_dh_install:
 		&& ln -sf $$(basename $$script .pl) $$script; \
 	done
 	dh_install
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
 
 override_dh_installman:
 	dh_installman --language=C