fastq-reader.h 1.93 KB
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/*===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 */

#ifndef _h_fastq_reader_
#define _h_fastq_reader_

#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif

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#include "fastq-parse.h"

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#ifdef __cplusplus
extern "C" {
#endif

/*--------------------------------------------------------------------------
 * forwards
 */
struct KDirectory;
struct ReaderFile;

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rc_t CC FastqReaderFileMake( const struct ReaderFile **self, 
                             const struct KDirectory* dir, 
                             const char* file, 
                             enum FASTQQualityFormat qualityFormat, 
                             int8_t defaultReadNumber, 
                             bool ignoreSpotGroups);
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#ifdef __cplusplus
}
#endif

#endif /* _h_fastq_reader_ */