sam-aligned.h 1.59 KB
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/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
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#ifndef _h_sam_aligned_
#define _h_sam_aligned_
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#ifdef __cplusplus
extern "C" {
#endif
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#if 0
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}
#endif

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#include "sam-dump-opts.h"
#include "inputfiles.h"
#include "matecache.h"

#define COL_READ "(INSDC:dna:text)READ"

rc_t print_aligned_spots( const samdump_opts * const opts,
                          const input_files * const ifs,
                          matecache * const mc );

#endif