Commit 40b9ddad authored by Andreas Tille's avatar Andreas Tille
Browse files

New upstream version 2.9.1-1+dfsg

parent 879f9285

.gitignore

+11 −23
Original line number Diff line number Diff line 
user.status

vgcore.*

*~

.DS_Store

._*

*.d

*.db

*.o

*.pyc

/bin64

/build/BUILD.*

/build/COMP.mac

/build/Makefile.config*

/build/MSVC/2010/ipch

/build/MSVC/2010/ncbi-vdb.opensdf

/centos

/ilib64

/lib64

/mac

/Makefile.config.mac.arch

/Makefile.config.*

/reconfigure

/schema

/test-bin64

user.status

/win

*.opensdf

*.sdf

*.suo

*.log

/.cproject

/.project

/.pydevproject



# mac os x meta-files

.DS_Store

._*



*~

\#*

.\#*

core

*.pyc

.gdb_history

.vscode

.gdb_history
 
*.stash

tmp.kfg

CHANGES.md

+171 −39

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LICENSE

+1 −12
Original line number Diff line number Diff line
@@ -31,18 +31,7 @@ Please cite the authors in any work or product based on this material. 
==============================================================

EXCEPTIONS (in all cases excluding NCBI-written makefiles):



Location: {libs,interfaces}/ext/bzip2

Author:   Julian R Seward

License:  BSDish [libs/ext/bzip2/LICENSE]



Location: {libs,interfaces}/ext/zlib

Authors:  Jean-loup Gailly and Mark Adler

License:  BSDish [interfaces/ext/zlib.h]



Location: libs/klib

Author:   Douglas C. Schmidt

License:  GNU Lesser General Public [libs/klib/qsort.c]



See LICENSE from https://github.com/ncbi/ncbi-vdb



==============================================================

Copyright F.A.Q.

Makefile

+36 −8
Original line number Diff line number Diff line
@@ -34,14 +34,15 @@ include $(TOP)/build/Makefile.shell 
# default

#

SUBDIRS = \

	libs \

	shared \

	tools \



# common targets for non-leaf Makefiles; must follow a definition of SUBDIRS

include $(TOP)/build/Makefile.targets



default: $(SUBDIRS)



test: $(SUBDIRS)

test: all



$(SUBDIRS) test:

	@ $(MAKE) -C $@
@@ -61,11 +62,10 @@ $(SUBDIRS_STD): 
#-------------------------------------------------------------------------------

# install

#



install: 

	@ echo "Checking make status of object libraries..."

	@ $(MAKE) -s --no-print-directory TOP=$(CURDIR) $(SUBDIRS)

	@ $(MAKE) -s --no-print-directory TOP=$(CURDIR) -f build/Makefile.install install

	@ echo "Checking make status of tools..."

	@ $(MAKE) -s --no-print-directory TOP=$(CURDIR) std

	@ $(MAKE) -s TOP=$(CURDIR) -f build/Makefile.install install



uninstall:    

	@ $(MAKE) -s TOP=$(CURDIR) -f build/Makefile.install uninstall
@@ -75,7 +75,7 @@ uninstall: 
#-------------------------------------------------------------------------------

# clean

#

clean: clean_test

clean: clean_deb clean_rpm clean_test



clean_test:

	@ $(MAKE) -s -C test clean
@@ -88,6 +88,8 @@ runtests: runtests_test 
runtests_test:

	@ $(MAKE) -s -C test runtests



#	@ $(MAKE) -s -C ngs runtests



#-------------------------------------------------------------------------------

# slowtests

#
@@ -104,6 +106,32 @@ valgrind: valgrind_test 
valgrind_test:

	@ $(MAKE) -s -C test valgrind



#-------------------------------------------------------------------------------

# RPM

#

ifeq (mac,$(OS))

rpm:

	@ echo "Not making rpm on Mac"

clean_rpm:

else

rpm: std

	@ $(MAKE)       rpm -s TOP=$(CURDIR) -f build/Makefile.rpm

clean_rpm:

	@ $(MAKE) clean_rpm -s TOP=$(CURDIR) -f build/Makefile.rpm

endif



#-------------------------------------------------------------------------------

# DEB

#

ifeq (mac,$(OS))

deb: std

else

deb:

endif

	@ $(MAKE)       deb -s TOP=$(CURDIR) -f build/Makefile.deb

clean_deb:

	@ $(MAKE) clean_deb -s TOP=$(CURDIR) -f build/Makefile.deb



#-------------------------------------------------------------------------------

# pass-through targets

#
@@ -140,7 +168,7 @@ $(REPORTS): 
# configuration help

#

help configure:

	@ echo "Before initial build, run 'make OUTDIR=<dir> out' from"

	@ echo "Before initial build, run './configure --build-prefix=<out>' from"

	@ echo "the project root to set the output directory of your builds."

	@ echo

	@ echo "To select a compiler, run 'make <comp>' where"

README-blastn

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+133 −0

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