debian/changelog

+sspace (2.1.1+dfsg-4) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Secure URI in copyright format
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test
+  * Fix perl interpreter
+
+ -- Andreas Tille <tille@debian.org>  Fri, 19 Oct 2018 11:17:15 +0200
+
 sspace (2.1.1+dfsg-3) unstable; urgency=medium
 
   * Allow stderr output in autopkgtest.

debian/compat

-9
+11

debian/control

@@ -4,14 +4,14 @@ Uploaders: Andreas Tille <tille@debian.org>,
            Sascha Steinbiss <satta@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
                recode,
                python,
                asciidoctor,
                bowtie
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sspace.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/sspace.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/sspace
+Vcs-Git: https://salsa.debian.org/med-team/sspace.git
 Homepage: https://github.com/nsoranzo/sspace_basic
 
 Package: sspace

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: SSPACE_basic
 Upstream-Contact: Nicola Soranzo <nicola.soranzo@tgac.ac.uk>
 Source: https://github.com/nsoranzo/sspace_basic/releases

debian/rules

@@ -15,8 +15,14 @@ override_dh_install:
 	chmod -x debian/sspace/usr/share/sspace/tools/TRIMMING_PAIRED_READS.README \
 	         debian/sspace/usr/share/sspace/tools/TQS.readme \
 	         debian/sspace/usr/share/sspace/dotlib/DotLib.pm
+	for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
+
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	debian/tests/example-tests $(CURDIR)/SSPACE_Basic.pl
+endif
 
 override_dh_installexamples:
 	dh_installexamples