debian/changelog

+staden-io-lib (1.14.11-2) unstable; urgency=medium
+
+  * Fix build on non-x86 architectures (thanks to James Bonfield
+    <jkb@sanger.ac.uk>)
+    Closes: #912451
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/copyright
+
+ -- Andreas Tille <tille@debian.org>  Sun, 02 Dec 2018 08:50:21 +0100
+
 staden-io-lib (1.14.11-1) unstable; urgency=medium
 
   * New upstream version featuring SOVERSION bump

debian/patches/fix_non_x86.patch

+From: James Bonfield <jkb@sanger.ac.uk>
+Date: Wed, 28 Nov 2018 16:46:36 +0000
+Origin: https://github.com/jkbonfield/io_lib/commit/faa2a8a71129a94e4911f4d1231048aa259f8a1b
+Bug-Debian: https://bugs.debian.org/912451
+Subject: [PATCH] Bug fix to scramble on systems not defining ALLOW_UAC.
+
+(Mostly non-Intel platforms.)
+---
+ io_lib/bam.c | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/io_lib/bam.c b/io_lib/bam.c
+index 387dcec..55d0919 100644
+--- a/io_lib/bam.c
++++ b/io_lib/bam.c
+@@ -1751,11 +1751,11 @@ int bam_get_seq(bam_file_t *b, bam_seq_t **bsp) {
+ 	    return -1;
+     }
+ 
+-    if (!*bsp || blk_size+24 > (*bsp)->alloc) {
+-	if (!(bs = realloc(*bsp, blk_size+24)))
++    if (!*bsp || blk_size+44 > (*bsp)->alloc) {
++	if (!(bs = realloc(*bsp, blk_size+44)))
+ 	    return -1;
+ 	*bsp = bs;
+-	(*bsp)->alloc = blk_size+24;
++	(*bsp)->alloc = blk_size+44;
+ 	(*bsp)->blk_size = blk_size;
+     }
+     bs = *bsp;

debian/patches/series

 pathmax.patch
 fix_fseeko.patch
+fix_non_x86.patch