Imported Upstream version 1.4.6-p3+dfsg

parent c790db43
......@@ -82,12 +82,16 @@ void warning_file_limit()
}
}
void print_in_box(int line_width, int is_boundary, int is_center, char * pattern,...)
void print_in_box(int line_width, int is_boundary, int options, char * pattern,...)
{
int put_color_for_colon, is_center;
va_list args;
va_start(args , pattern);
char is_R_linebreak=0, * content, *out_line_buff;
put_color_for_colon = (options & PRINT_BOX_NOCOLOR_FOR_COLON)?0:1;
is_center = (options & PRINT_BOX_CENTER)?1:0;
content= malloc(1000);
out_line_buff= malloc(1000);
out_line_buff[0]=0;
......@@ -224,7 +228,7 @@ void print_in_box(int line_width, int is_boundary, int is_center, char * pattern
break;
}
}
if(col1w>0 && col1w < content_len-1)
if(col1w>0 && col1w < content_len-1 && put_color_for_colon)
{
content[col1w+1]=0;
strcat(out_line_buff,content);
......@@ -255,6 +259,7 @@ void print_in_box(int line_width, int is_boundary, int is_center, char * pattern
int show_summary(global_context_t * global_context)
{
......
SUBREAD_VERSION="1.4.6-p2"
SUBREAD_VERSION="1.4.6-p3"
STATIC_MAKE=
#STATIC_MAKE= -static
This diff is collapsed.
......@@ -32,6 +32,9 @@
#include "hashtable.h"
#define PRINT_BOX_NOCOLOR_FOR_COLON 2
#define PRINT_BOX_CENTER 1
#define SAM_FLAG_PAIRED_TASK 0x01
#define SAM_FLAG_FIRST_READ_IN_PAIR 0x40
#define SAM_FLAG_SECOND_READ_IN_PAIR 0x80
......
a87c3f05f25477325ea8f2742f05231b ../small1.00.b.array
b5bf8ea4c82873ab98cc52e334c5e53b ../small1.00.b.tab
*************************************************
*** SINGLE-END READS NO ERROR ******
*************************************************
unmatched= 563 ; matched= 19435 ; unmapped= 0 ; reads= 19998 ;NN= 0
accuracy= 0.971847184718 ; sensitivity= 1.0
unmatched= 549 ; matched= 19418 ; unmapped= 31 ; reads= 19998 ;NN= 0
accuracy= 0.972504632644 ; sensitivity= 0.998449844984
paired_match= 0 ; paired= 0.0
*************************************************
*** SINGLE-END READS NO ERROR NO DUP ******
*************************************************
unmatched= 57 ; matched= 18791 ; unmapped= 1150 ; reads= 19998 ;NN= 0
accuracy= 0.996975806452 ; sensitivity= 0.942494249425
unmatched= 43 ; matched= 18774 ; unmapped= 1181 ; reads= 19998 ;NN= 0
accuracy= 0.997714832332 ; sensitivity= 0.940944094409
paired_match= 0 ; paired= 0.0
*************************************************
*** READS WITH NO ERROR ******
*************************************************
unmatched= 630 ; matched= 39366 ; unmapped= 0 ; reads= 39996 ;NN= 0
accuracy= 0.984248424842 ; sensitivity= 1.0
paired_match= 39308 ; paired= 0.998526647361
unmatched= 603 ; matched= 39342 ; unmapped= 51 ; reads= 39996 ;NN= 0
accuracy= 0.984904243335 ; sensitivity= 0.998724872487
paired_match= 39260 ; paired= 0.997915713487
*************************************************
*** READS NO ERROR, NO DUPLICATED REPORT ******
*************************************************
unmatched= 188 ; matched= 38790 ; unmapped= 1018 ; reads= 39996 ;NN= 0
accuracy= 0.995176766381 ; sensitivity= 0.974547454745
paired_match= 38710 ; paired= 0.997937612787
unmatched= 165 ; matched= 38786 ; unmapped= 1045 ; reads= 39996 ;NN= 0
accuracy= 0.9957639085 ; sensitivity= 0.973872387239
paired_match= 38690 ; paired= 0.997524880111
*************************************************
*** READS WITH ONLY SEQUENCING ERROR ******
*************************************************
unmatched= 920 ; matched= 39068 ; unmapped= 12 ; reads= 40000 ;NN= 0
accuracy= 0.976993097929 ; sensitivity= 0.9997
paired_match= 38848 ; paired= 0.994368792874
unmatched= 655 ; matched= 33542 ; unmapped= 5803 ; reads= 40000 ;NN= 0
accuracy= 0.980846273065 ; sensitivity= 0.854925
paired_match= 28692 ; paired= 0.855405163675
*************************************************
*** READS WITH SEQUENCING ERROR AND MUTATION ***
*** SUBREAD IS RUN WITH LONG INDEL DETECTION ***
*************************************************
unmatched= 862 ; matched= 39131 ; unmapped= 7 ; reads= 40002 ;NN= 0
accuracy= 0.97844622809 ; sensitivity= 0.999775011249
paired_match= 38902 ; paired= 0.994147862309
unmatched= 628 ; matched= 33205 ; unmapped= 6167 ; reads= 40002 ;NN= 0
accuracy= 0.981438240771 ; sensitivity= 0.845782710864
paired_match= 28042 ; paired= 0.84451136877
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