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Commits on Source (3)
......@@ -12,4 +12,9 @@ Subread User Guide can be found on the project's web site:
http://bioinf.wehi.edu.au/subread-package/SubreadUsersGuide.pdf
-- Alex Mestiashvili <alex@biotec.tu-dresden.de> Thu, 07 May 2015 15:24:57 +0200
Subread 1.6.3 changes:
detectionCall binary is excluded from 1.6.3+dfsg-1 package due to it's
bugginess. The issue is submited to the upstream and hopefully will
be resolved in the next releases.
-- Alex Mestiashvili <mestia@debian.org> Thu, 07 May 2015 15:24:57 +0200
subread (1.6.3+dfsg-1) UNRELEASED; urgency=medium
subread (1.6.3+dfsg-1) unstable; urgency=medium
[ Alexandre Mestiashvili ]
* New upstream version 1.6.3+dfsg
* DH_VERBOSE=1, check for nocheck in DEB_BUILD_OPTIONS
* Bump Policy to 4.3.0
* Refresh patches
* New binary detectionCall segfaults,
remove dropped by upstream coverageCount
* TODO: waiting for answer from upstream regarding segfault on derectionCall
* Don't install buggy detectionCall binary
* Update d/README.Debian
[ Andreas Tille ]
* debhelper 12
-- Alexandre Mestiashvili <mestia@debian.org> Thu, 11 Oct 2018 12:33:55 +0000
-- Alexandre Mestiashvili <mestia@debian.org> Wed, 30 Jan 2019 20:19:47 +0100
subread (1.6.2+dfsg-1) unstable; urgency=medium
......
......@@ -72,8 +72,8 @@ DNA-seq reads and RNA-seq reads (for the purpose of expression analysis)' \
# $(HELP2MAN) --name='counting the coverage of mapped reads at each location on the entire reference genome' \
# $(utildir)/coverageCount | debian/filter.pl > $(mandir)/coverageCount.1;
$(HELP2MAN) --name='detectionCall' \
$(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1;
# $(HELP2MAN) --name='detectionCall' \
# $(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1;
$(HELP2MAN) --name='calculate the proportion of mapped reads/fragments' \
$(utildir)/propmapped | debian/filter.pl > $(mandir)/propmapped.1;
......
......@@ -5,7 +5,6 @@ bin/subjunc usr/bin
bin/sublong usr/bin
bin/subread-align usr/bin
bin/subread-buildindex usr/bin
bin/utilities/detectionCall usr/lib/subread
bin/utilities/propmapped usr/lib/subread
bin/utilities/qualityScores usr/lib/subread
bin/utilities/removeDup usr/lib/subread
......