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Commits on Source (3)
Don't install buggy detectionCall binary
· 17088b4b
Alexandre Mestiashvili
authored
Jan 30, 2019
17088b4b
Update d/README.Debian
· d7f4e6bf
Alexandre Mestiashvili
authored
Jan 30, 2019
d7f4e6bf
Update d/chaneglog
· 0c38a9c5
Alexandre Mestiashvili
authored
Jan 30, 2019
Gbp-Dch: Ignore
0c38a9c5
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debian/README.Debian
View file @
0c38a9c5
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@@ -12,4 +12,9 @@ Subread User Guide can be found on the project's web site:
http://bioinf.wehi.edu.au/subread-package/SubreadUsersGuide.pdf
-- Alex Mestiashvili <alex@biotec.tu-dresden.de> Thu, 07 May 2015 15:24:57 +0200
Subread 1.6.3 changes:
detectionCall binary is excluded from 1.6.3+dfsg-1 package due to it's
bugginess. The issue is submited to the upstream and hopefully will
be resolved in the next releases.
-- Alex Mestiashvili <mestia@debian.org> Thu, 07 May 2015 15:24:57 +0200
debian/changelog
View file @
0c38a9c5
subread (1.6.3+dfsg-1)
UNRELEASED
; urgency=medium
subread (1.6.3+dfsg-1)
unstable
; urgency=medium
[ Alexandre Mestiashvili ]
* New upstream version 1.6.3+dfsg
* DH_VERBOSE=1, check for nocheck in DEB_BUILD_OPTIONS
* Bump Policy to 4.3.0
* Refresh patches
* New binary detectionCall segfaults,
remove dropped by upstream coverageCount
* TODO: waiting for answer from upstream regarding segfault on derectionCall
* Don't install buggy detectionCall binary
* Update d/README.Debian
[ Andreas Tille ]
* debhelper 12
-- Alexandre Mestiashvili <mestia@debian.org>
Thu, 11 Oct 2018 12:33:55
+0
0
00
-- Alexandre Mestiashvili <mestia@debian.org>
Wed, 30 Jan 2019 20:19:47
+0
1
00
subread (1.6.2+dfsg-1) unstable; urgency=medium
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debian/rules
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0c38a9c5
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@@ -72,8 +72,8 @@ DNA-seq reads and RNA-seq reads (for the purpose of expression analysis)' \
# $(HELP2MAN) --name='counting the coverage of mapped reads at each location on the entire reference genome' \
# $(utildir)/coverageCount | debian/filter.pl > $(mandir)/coverageCount.1;
$(HELP2MAN) --name='detectionCall' \
$(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1;
#
$(HELP2MAN) --name='detectionCall' \
#
$(utildir)/detectionCall | debian/filter.pl > $(mandir)/detectionCall.1;
$(HELP2MAN) --name='calculate the proportion of mapped reads/fragments' \
$(utildir)/propmapped | debian/filter.pl > $(mandir)/propmapped.1;
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debian/subread.install
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0c38a9c5
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@@ -5,7 +5,6 @@ bin/subjunc usr/bin
bin
/
sublong
usr
/
bin
bin
/
subread
-
align
usr
/
bin
bin
/
subread
-
buildindex
usr
/
bin
bin
/
utilities
/
detectionCall
usr
/
lib
/
subread
bin
/
utilities
/
propmapped
usr
/
lib
/
subread
bin
/
utilities
/
qualityScores
usr
/
lib
/
subread
bin
/
utilities
/
removeDup
usr
/
lib
/
subread
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