Commit aeb3e288 authored by Andreas Tille's avatar Andreas Tille
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New upstream version 1.0.34

parent 8d46c123

._sumatra.c

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._sumatra_user_manual.md

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._sumatra_user_manual.pdf

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Makefile

+17 −16
Original line number Diff line number Diff line 
PREFIX=/usr/local



CFLAGS=-I$(PREFIX)/include



EXEC = sumatra



SUMATRA_SRC = sumatra.c \
@@ -5,10 +9,9 @@ SUMATRA_SRC= sumatra.c \ 
			              

SUMATRA_OBJ = $(patsubst %.c,%.o,$(SUMATRA_SRC))





SRCS = $(SUMATRA_SRC)



LIB= -lfasta -llcs -lfile -lutils -lz -lm

LIB = -lsuma -lz -lm



include ./global.mk
@@ -23,8 +26,8 @@ all: $(EXEC) 


# executable compilation and link



sumatra: $(SUMATRA_OBJ) $(LIBFASTA) $(LIBLCS) $(LIBFILE) $(LIBUTILS)

	$(CC) $(LDFLAGS) -o $@ -pthread $(SUMATRA_OBJ) $(LIBFASTAPATH) $(LIBLCSPATH) $(LIBFILEPATH) $(LIBUTILSPATH) $(LIB)

sumatra: $(SUMATRA_OBJ)

	$(CC) $(LDFLAGS) -o $@ -pthread $(SUMATRA_OBJ) $(LIBSUMAPATH) $(LIB)

	

########

#
@@ -33,12 +36,10 @@ sumatra: $(SUMATRA_OBJ) $(LIBFASTA) $(LIBLCS) $(LIBFILE) $(LIBUTILS) 
########



clean:

	rm -f *.o	

	rm -f *.P

	rm -f $(SUMATRA_OBJ)	

	rm -f $(EXEC)

	$(MAKE) -C ./sumalibs/libfasta clean

	$(MAKE) -C ./sumalibs/liblcs clean

	$(MAKE) -C ./sumalibs/libfile clean

	$(MAKE) -C ./sumalibs/libutils clean



	$(MAKE) -C ./sumalibs clean



install: all

	install -d $(DESTDIR)$(PREFIX)/bin/

	install -m 755 $(EXEC) $(DESTDIR)$(PREFIX)/bin/

README.md

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[See the wiki](https://git.metabarcoding.org/obitools/sumatra/wikis/home)
 
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