Commit 4158fee6 authored by Andreas Tille's avatar Andreas Tille
Browse files

Fix string buffer size

parent 8b1a4a5d

debian/changelog

+7 −0
Original line number Diff line number Diff line 
theseus (3.3.0-8) UNRELEASED; urgency=medium



  * Fix string buffer size

    Closes: #908459



 -- Andreas Tille <tille@debian.org>  Wed, 10 Oct 2018 07:35:18 +0200



theseus (3.3.0-7) unstable; urgency=medium



  [ Fabian Kloetzl ]

debian/patches/0005_stringbuffer.patch

0 → 100644
+36 −0
Original line number Diff line number Diff line 
Description: Fix string buffer size

Bug-Debian: https://bugs.debian.org/908459

Author: Andreas Tille <tille@debian.org>

Last-Update: Wed, 10 Oct 2018 07:35:18 +0200



--- a/libmsa/msa.c

+++ b/libmsa/msa.c

@@ -608,7 +608,7 @@ MSA

 {

     int             i, j, cnt, dig;

     int             len = 11;

-    char            digit[len];

+    char            digit[len+1];

 

     for(i = 0; i < msa->seqnum; ++i)

         msa->name[i][len] = '\0';

@@ -637,7 +637,7 @@ MSA

                 }

 

                 //printf("\n## %d %d %d %s %s  (%d,%d)", cnt, dig, len-dig, msa->name[i], msa->name[j], i ,j);

-                strncpy(&msa->name[j][len-dig], digit, len);

+                strncpy(&msa->name[j][len-dig], digit, len+1);

                 //printf("\n## %d %d %d %s %s\n", cnt, dig, len-dig, msa->name[i], msa->name[j]);

                 ++cnt;

             }

--- a/MultiPose2MSA.c

+++ b/MultiPose2MSA.c

@@ -156,7 +156,7 @@ Align2segID(PDBCdsArray *pdbA)

     MSA            *msa = pdbA->seq2pdb->msa;

     char           *seq = NULL;

     int             resSeq = 0;

-    char            alnindex[5];

+    char            alnindex[11];

     PDBCds         *cdsi = NULL;

 

     for (i = 0; i < cnum; ++i)

debian/patches/series

+1 −0
Original line number Diff line number Diff line
@@ -2,3 +2,4 @@ 
gcc-7.patch

0003-fix-issues-uncovered-by-gcc8.patch

0004-create-lib-dir.patch

0005_stringbuffer.patch