LICENSE

+Copyright (c) 2008-2018, Christoph Gohlke
+Copyright (c) 2008-2018, The Regents of the University of California
+Produced at the Laboratory for Fluorescence Dynamics
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice,
+  this list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.

MANIFEST.in

+include LICENSE
+include README.rst
+
+include tiffile.py
+include setup_tiffile.py
+include tests/*.py
+
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+recursive-exclude * *-
+recursive-exclude test/data *
+recursive-exclude test/_tmp *

debian/changelog

-tifffile (20170929-2) UNRELEASED; urgency=medium
+tifffile (20181128-1) UNRELEASED; urgency=medium
 
+  * New upstream version
   * autopkgtest: Restrictions: allow-stderr
     Closes: #895176
   * Point Vcs fields to salsa.debian.org
@@ -9,8 +10,12 @@ tifffile (20170929-2) UNRELEASED; urgency=medium
   * The package does not really provide a Python module for inclusion into
     other projects.  Thus the binary is renamed to tifffile.  It was
     ported to Python3 by upstream - thus the Python3 Build-Depends
+  * Point watch file to PyPI
+    Closes: #912661
+  * Standards-Version: 4.2.1
+  * Use --buildsystem=pybuild
 
- -- Andreas Tille <tille@debian.org>  Mon, 09 Apr 2018 08:51:41 +0200
+ -- Andreas Tille <tille@debian.org>  Sat, 01 Dec 2018 07:11:47 +0100
 
 tifffile (20170929-1) unstable; urgency=medium
 

debian/control

@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~),
                dh-python,
                python3-all-dev,
                python3-numpy (>= 1:1.7.1)
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/tifffile
 Vcs-Git: https://salsa.debian.org/med-team/tifffile.git
 Homepage: http://www.lfd.uci.edu/~gohlke/
@@ -19,7 +19,7 @@ Depends: ${python3:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
          python3
-Recommends: python3-matplotlib (>= 1.3)
+Recommends: python3-matplotlib
 Conflicts: python-tifffile
 Provides: ${python3:Provides}
 Replaces: python-tifffile

debian/patches/series

-setuppy.patch

debian/patches/setuppy.patch

-Author: Mathieu Malaterre <mathieu.malaterre@gmail.com>
-Description: Add setup.py to simplify building Python target
-
---- /dev/null
-+++ b/setup.py
-@@ -0,0 +1,23 @@
-+"""A Python script to build the _tifffile extension module.
-+
-+Usage:: ``python setup.py build_ext --inplace``
-+
-+"""
-+
-+from distutils.core import setup, Extension
-+import numpy
-+
-+setup(name='_tifffile',
-+    version="2013.11.03",
-+    description="Reads image and meta-data from many bio-scientific formats such as plain TIFF, BigTIFF, OME-TIFF, STK, LSM, NIH, ImageJ, GEL, and FluoView files",
-+    keywords="tiff,stk,lsm",
-+    author="Christoph Gohlke",
-+    url="http://www.lfd.uci.edu/~gohlke/",
-+    license="BSD",
-+    py_modules=['tifffile'],
-+    ext_modules=[
-+      Extension(
-+        '_tifffile', ['tifffile.c'],
-+        include_dirs=[numpy.get_include()]
-+        )],
-+)

debian/rules

@@ -8,7 +8,7 @@ endif
 export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 %:
-	dh $@ --with python3
+	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_install:
 	dh_numpy

debian/watch

-version=3
+version=4
+
 opts=uversionmangle=s/(\d)[_\.\-\+]?((RC|rc|pre|dev|beta|alpha|b|a)\d*)$/$1~$2/;s/^(\d{4}).(\d\d).(\d\d)$/$1$2$3/ \
-     https://github.com/malaterre/tifffile/tags .*/(\d.*)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))
+  https://pypi.python.org/simple/tifffile .*/tifffile-@ANY_VERSION@@ARCHIVE_EXT@#sha256=.*

getorig.sh

-#!/bin/sh
-
-VERSIONOLD=`grep "^:Version" tifffile.py`
-#wget -c http://www.lfd.uci.edu/~gohlke/code/tifffile.py.html
-curl -s -o tifffile.py.html http://www.lfd.uci.edu/~gohlke/code/tifffile.py.html
-#wget -c http://www.lfd.uci.edu/~gohlke/code/tifffile.c.html
-curl -s -o tifffile.c.html http://www.lfd.uci.edu/~gohlke/code/tifffile.c.html
-links -dump tifffile.py.html > tifffile.py
-sed -i -e 's/^ //g' tifffile.py
-links -dump tifffile.c.html > tifffile.c
-sed -i -e 's/^ //g' tifffile.c
-rm *.html
-VERSION=`grep "^:Version" tifffile.py`
-echo $VERSIONOLD
-echo $VERSION
-TAG=`echo $VERSION | cut -d' ' -f2`
-if [ "$VERSION" != "$VERSIONOLD" ]; then
-  echo "Different"
-  echo "TAG: $TAG"
-  git commit -a -m"$VERSION"
-  git tag $TAG
-  git push --all
-  git push --tags
-fi

setup.cfg

+[egg_info]
+tag_build = 
+tag_date = 0
+

setup.py

+# -*- coding: utf-8 -*-
+# tifffile/setup.py
+
+"""Tifffile package setuptools script."""
+
+import sys
+import re
+
+from setuptools import setup
+
+buildnumber = ''
+
+imagecodecs = 'imagecodecs>=2018.11.8'
+
+with open('tifffile/tifffile.py') as fh:
+    code = fh.read()
+
+version = re.search(r"__version__ = '(.*?)'", code).groups()[0]
+version += ('.' + buildnumber) if buildnumber else ''
+description = re.search(r'"""(.*)\.[\r\n?|\n]', code).groups()[0]
+readme = re.search(r'[\r\n?|\n]{2}"""(.*)"""[\r\n?|\n]{2}from', code,
+                   re.MULTILINE | re.DOTALL).groups()[0]
+license = re.search(r'(# Copyright.*?[\r\n?|\n])[\r\n?|\n]+""', code,
+                    re.MULTILINE | re.DOTALL).groups()[0]
+
+readme = '\n'.join([description, '=' * len(description)]
+                   + readme.splitlines()[1:])
+license = license.replace('# ', '').replace('#', '')
+
+if 'sdist' in sys.argv:
+    with open('LICENSE', 'w') as fh:
+        fh.write(license)
+    with open('README.rst', 'w') as fh:
+        fh.write(readme)
+
+setup(
+    name='tifffile',
+    version=version,
+    description=description,
+    long_description=readme,
+    author='Christoph Gohlke',
+    author_email='cgohlke@uci.edu',
+    url='https://www.lfd.uci.edu/~gohlke/',
+    license='BSD',
+    packages=['tifffile'],
+    python_requires='>=2.7',
+    install_requires=[
+        'numpy>=1.11.3',
+        'pathlib;python_version=="2.7"',
+        'enum34;python_version=="2.7"',
+        'futures;python_version=="2.7"',
+        # require imagecodecs on Windows only
+        imagecodecs + ';platform_system=="Windows"',
+        ],
+    extras_require={
+        'all': ['matplotlib>=2.2', imagecodecs],
+    },
+    tests_require=['pytest', imagecodecs],
+    entry_points={
+        'console_scripts': [
+            'tifffile = tifffile:main',
+            'lsm2bin = tifffile.lsm2bin:main'
+            ]},
+    platforms=['any'],
+    classifiers=[
+        'Development Status :: 4 - Beta',
+        'License :: OSI Approved :: BSD License',
+        'Intended Audience :: Science/Research',
+        'Intended Audience :: Developers',
+        'Operating System :: OS Independent',
+        'Programming Language :: Python :: 2',
+        'Programming Language :: Python :: 2.7',
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.4',
+        'Programming Language :: Python :: 3.5',
+        'Programming Language :: Python :: 3.6',
+        'Programming Language :: Python :: 3.7',
+        ],
+)

setup_tiffile.py

+# -*- coding: utf-8 -*-
+# setup_tiffile.py
+
+"""Tiffile module setuptools script."""
+
+import re
+
+from setuptools import setup
+
+with open('tifffile/tifffile.py') as fh:
+    code = fh.read()
+
+version = re.search(r"__version__ = '(.*?)'", code).groups()[0]
+
+setup(
+    name='tiffile',
+    version=version,
+    description='The tiffile package is deprecated. '
+                'Please use the tifffile package instead.',
+    author='Christoph Gohlke',
+    author_email='cgohlke@uci.edu',
+    url='https://www.lfd.uci.edu/~gohlke/',
+    license='BSD',
+    py_modules=['tiffile'],
+    install_requires=['tifffile'],
+    platforms=['any'],
+    classifiers=[
+        'Development Status :: 4 - Beta',
+        'License :: OSI Approved :: BSD License',
+        'Intended Audience :: Science/Research',
+        'Intended Audience :: Developers',
+        'Operating System :: OS Independent',
+        'Programming Language :: Python :: 2',
+        'Programming Language :: Python :: 2.7',
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.4',
+        'Programming Language :: Python :: 3.5',
+        'Programming Language :: Python :: 3.6',
+        'Programming Language :: Python :: 3.7',
+        ],
+)

tests/conftest.py

+# -*- coding: utf-8 -*-
+# tifffile/tests/conftest.py
+
+collect_ignore = ['_tmp', 'data']
+
+
+def pytest_report_header(config):
+    try:
+        import numpy
+        import tifffile
+        import imagecodecs
+        return 'versions: tifffile-%s, imagecodecs-%s, numpy-%s' % (
+            tifffile.__version__, imagecodecs.__version__, numpy.__version__)
+    except Exception:
+        pass

tifffile.egg-info/SOURCES.txt

+LICENSE
+MANIFEST.in
+README.rst
+setup.py
+setup_tiffile.py
+tiffile.py
+tests/conftest.py
+tests/test_tifffile.py
+tifffile/__init__.py
+tifffile/__main__.py
+tifffile/lsm2bin.py
+tifffile/tifffile.py
+tifffile/tifffile_geodb.py
+tifffile.egg-info/PKG-INFO
+tifffile.egg-info/SOURCES.txt
+tifffile.egg-info/dependency_links.txt
+tifffile.egg-info/entry_points.txt
+tifffile.egg-info/requires.txt
+tifffile.egg-info/top_level.txt
\ No newline at end of file

tifffile.egg-info/dependency_links.txt

+