debian/changelog

+tnseq-transit (3.0.1-2) unstable; urgency=medium
+
+  * (Build-)Depends: python3-pubsub (instead of python3-pypubsub)
+    Thanks for the patch to Sebastien Bacher <seb128@ubuntu.com>
+    Closes: #946892
+  * Set upstream metadata fields: Bug-Database, Repository, Repository-
+    Browse.
+
+ -- Andreas Tille <tille@debian.org>  Tue, 17 Dec 2019 12:11:09 +0100
+
 tnseq-transit (3.0.1-1) unstable; urgency=medium
 
   [ Andreas Tille ]

debian/control

@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 12),
                python3-pil,
                python3-matplotlib,
                python3-statsmodels,
-               python3-pypubsub,
+               python3-pubsub,
                bwa
 Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/tnseq-transit
@@ -28,7 +28,7 @@ Depends: ${python3:Depends},
          python3-pil,
          python3-matplotlib,
          python3-statsmodels,
-         python3-pypubsub,
+         python3-pubsub,
          python3-wxgtk4.0,
          bwa
 Breaks: transit

debian/upstream/metadata

@@ -2,7 +2,7 @@ Reference:
 - Author: >
     Michael A. DeJesus and Chaitra Ambadipudi and Richard Baker and
     Christopher Sassetti and Thomas R. Ioerger
-  Title: "TRANSIT - A Software Tool for Himar1 TnSeq Analysis"
+  Title: TRANSIT - A Software Tool for Himar1 TnSeq Analysis
   Journal: PLOS
   Year: 2015
   Volume: 11
@@ -10,8 +10,8 @@ Reference:
   Pages: e1004401
   DOI: 10.1371/journal.pcbi.1004401
   PMID: 26447887
-  URL: "http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004401"
-  ePrint: "http://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004401&type=printable"
+  URL: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004401
+  ePrint: http://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004401&type=printable
 Registry:
 - Name: OMICtools
   Entry: OMICS_10215
@@ -21,4 +21,6 @@ Registry:
   Entry: NA
 - Name: conda:bioconda
   Entry: transit
-Repository: https://github.com/mad-lab/transit
+Repository: https://github.com/mad-lab/transit.git
+Bug-Database: https://github.com/mad-lab/transit/issues
+Repository-Browse: https://github.com/mad-lab/transit