debian/changelog

-tnseq-transit (3.0.1-1) UNRELEASED; urgency=medium
+tnseq-transit (3.0.1-1) unstable; urgency=medium
 
   [ Andreas Tille ]
   * New upstream version
@@ -7,13 +7,16 @@ tnseq-transit (3.0.1-1) UNRELEASED; urgency=medium
   * debhelper-compat 12
   * Standards-Version: 4.4.0
   * Depends: s/python3-wxgtk3.0/python3-wxgtk4.0/
-  TODO: https://pypi.org/project/PyPubSub/
-       -> see new queue (#939493)
+  * (Build-)Depends: python3-pypubsub
 
   [ Michael R. Crusoe ]
   * removed now-undeeded 2to3.patch
 
- -- Andreas Tille <tille@debian.org>  Thu, 25 Jul 2019 21:35:41 +0200
+  [ Andreas Tille ]
+  * Standards-Version: 4.4.1
+  * Set upstream metadata fields: Repository.
+
+ -- Andreas Tille <tille@debian.org>  Tue, 12 Nov 2019 13:43:11 +0100
 
 tnseq-transit (2.5.2-1) unstable; urgency=medium
 

debian/control

@@ -14,7 +14,7 @@ Build-Depends: debhelper-compat (= 12),
                python3-statsmodels,
                python3-pypubsub,
                bwa
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/tnseq-transit
 Vcs-Git: https://salsa.debian.org/med-team/tnseq-transit.git
 Homepage: http://saclab.tamu.edu/essentiality/transit/
@@ -27,6 +27,8 @@ Depends: ${python3:Depends},
          python3-scipy,
          python3-pil,
          python3-matplotlib,
+         python3-statsmodels,
+         python3-pypubsub,
          python3-wxgtk4.0,
          bwa
 Breaks: transit

debian/upstream/metadata

 Reference:
- - Author: >
+- Author: >
     Michael A. DeJesus and Chaitra Ambadipudi and Richard Baker and
     Christopher Sassetti and Thomas R. Ioerger
-   Title: "TRANSIT - A Software Tool for Himar1 TnSeq Analysis"
-   Journal: PLOS
-   Year: 2015
-   Volume: 11
-   Number: 10
-   Pages: e1004401
-   DOI: 10.1371/journal.pcbi.1004401
-   PMID: 26447887
-   URL: "http://journals.plos.org/ploscompbiol/article?id=\
-    10.1371/journal.pcbi.1004401"
-   ePrint: "http://journals.plos.org/ploscompbiol/article/file?id=\
-    10.1371/journal.pcbi.1004401&type=printable"
+  Title: "TRANSIT - A Software Tool for Himar1 TnSeq Analysis"
+  Journal: PLOS
+  Year: 2015
+  Volume: 11
+  Number: 10
+  Pages: e1004401
+  DOI: 10.1371/journal.pcbi.1004401
+  PMID: 26447887
+  URL: "http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004401"
+  ePrint: "http://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004401&type=printable"
 Registry:
- - Name: OMICtools
-   Entry: OMICS_10215
- - Name: bio.tools
-   Entry: TRANSIT
- - Name: SciCrunch
-   Entry: NA
- - Name: conda:bioconda
-   Entry: transit
+- Name: OMICtools
+  Entry: OMICS_10215
+- Name: bio.tools
+  Entry: TRANSIT
+- Name: SciCrunch
+  Entry: NA
+- Name: conda:bioconda
+  Entry: transit
+Repository: https://github.com/mad-lab/transit