debian/changelog

+toppred (1.10-7) unstable; urgency=medium
+
+  [ Andreas Henriksson ]
+  * Explicitly pass paths to configure instead of looking up tools
+    - fixes reproducible builds on merged-usr vs non-merged systems
+
+  [ Andreas Tille ]
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille <tille@debian.org>  Sat, 08 Dec 2018 07:37:13 +0100
+
 toppred (1.10-6) unstable; urgency=medium
 
   * d/rules: do not parse d/changelog

debian/control

@@ -6,7 +6,7 @@ Priority: optional
 Build-Depends: debhelper (>= 11~),
                gnuplot,
                libgd-dev
-Standards-Version: 4.1.5
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/toppred
 Vcs-Git: https://salsa.debian.org/med-team/toppred.git
 Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred

debian/rules

@@ -11,6 +11,12 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 %:
 	dh $@
 
+override_dh_auto_configure:
+	dh_auto_configure -- \
+		GREP=/bin/grep \
+		EGREP="/bin/grep -E" \
+		MKDIR_P="/bin/mkdir -p"
+
 override_dh_installexamples:
 	make -C test clean
 	dh_installexamples