debian/2ndscore.1

@@ -238,5 +238,3 @@ it's hard to vouch for its accuracy.
 .SH "SEE ALSO"
 .IX Header "SEE ALSO"
 \&\fItransterm\fR\|(1)
-.SH AUTHOR
-Alex Mestiashvili <alex@biotec.tu-dresden.de>

debian/changelog

+transtermhp (2.09-4) unstable; urgency=medium
+
+  [ Steffen Möller ]
+  * Updated RRID in d/u/metadata
+
+  [ Andreas Tille ]
+  * Remove invalid fields from debian/upstream/metadata
+
+  [ Alexandre Mestiashvili ]
+  * d/control:
+    - bump Policy to 4.1.4
+    - fix VCS-* fields use https
+    - update uploader's email
+    - debhelper v11
+  * d/rules:
+    - drop get-orig-source target
+    - enable hardening flags
+  * Drop get-orig-source script
+  * Fix typos in man pages
+
+ -- Alexandre Mestiashvili <mestia@debian.org>  Fri, 01 Jun 2018 20:43:35 +0200
+
 transtermhp (2.09-3) unstable; urgency=medium
 
   [ James McCoy]

debian/compat

-9
+11

debian/control

 Source: transtermhp
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Uploaders: Alex Mestiashvili <mestia@debian.org>,
+Uploaders: Alexandre Mestiashvili <mestia@debian.org>,
            Andreas Tille <tille@debian.org>,
            Fabian Klötzl <kloetzl@evolbio.mpg.de>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9)
+Build-Depends: debhelper (>= 11)
 Standards-Version: 4.1.4
 Vcs-Browser: https://salsa.debian.org/med-team/transtermhp
 Vcs-Git: https://salsa.debian.org/med-team/transtermhp.git

debian/rules

 #!/usr/bin/make -f
 
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
 # This has to be exported to make some magic below work.
 export DH_OPTIONS
-
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 %:
 	dh $@

debian/transterm.1

@@ -160,7 +160,7 @@ fasta file.
 .PP
 When processing an annotation for a chromosom with id = \s-1ID\s0, the first word of
 the '>' lines of the input sequences are searched for \s-1ID\s0.  Because there is no
-good standard for how the '>' line is formated, several heuristics are tried
+good standard for how the '>' line is formatted, several heuristics are tried
 to find \s-1ID\s0 in the '>' line. In the order tried, they are:
 .PP
 .Vb 4
@@ -338,7 +338,7 @@ will not remember these parameters for you. The best way to handle this is to
 make a shell script wrapper around transterm that always passes in your new
 parameters.
 .PP
-Output formating parameters do not require regeneration of expterms.dat \-\-\-
+Output formatting parameters do not require regeneration of expterms.dat \-\-\-
 see discussion above for which parameters expterm.dat depends on.
 .PP
 calibrate.sh can be found in /usr/share/doc/transtermhp/examples directory.
@@ -367,7 +367,7 @@ Following this line are any number of (at, R, M) triples, where 'at' is the \s-1
 content, R is a 4\-tuple (low_hp, high_hp, low_tail, high_tail) giving the
 range of the \s-1HP\s0 and tail scores observed in random sequences of this \s-1AT\s0
 content, and M is the distribution matrix.  These (at, R, M) triples are
-formated as follows:
+formatted as follows:
 .PP
 .Vb 5
 \&   at  low_hp  high_hp  low_tail  high_tail
@@ -390,5 +390,3 @@ matrix, and seqlen is the first number in the first line of the file.
 .SH "SEE ALSO"
 .IX Header "SEE ALSO"
 2ndscore(1)
-.SH AUTHOR
-Alex Mestiashvili <alex@biotec.tu-dresden.de>