Loading AUTHORS 100644 → 100755 +0 −0 File mode changed from 100644 to 100755. View file COPYING 100644 → 100755 +0 −0 File mode changed from 100644 to 100755. View file ChangeLog 100644 → 100755 +235 −7 Original line number Diff line number Diff line Loading @@ -5,18 +5,246 @@ ChangeLog Version date what has been changed TODO: missing quartet handling missing quartet counting in parallel case - positive 'penalties' for the non-penalized subtree - missing quartet handling - missing quartet counting in parallel case - primes-lcg64.c: int offset <=> unsigned MAXPRIMEOFFSET ??? (HAS) - user defined substitution matrices - more protein substitution matrices (cf. MrBayes) - AA models: Poisson, Equalin, mtMAM, rtREV, cpREV, BLOSUM, GTR, LG (Jones, Dayhoff, mtREV, WAG, VT exist already) - SeqFault by -wsl auf consensus - branchlength correction for ML evaluation of rooted usertrees (currently one of the two branchlengths at the root is lost when the root bifurcation is removed) - lcg64 -> mlfg (done?!?) - SPRNG for the sequential run (cmdline: number of runs/current number/seed), if parallel run are run sequentially - CHECK: continuous *.ptall file for parallel version - split rate-heterogeneity block in *.puzzle file order: rate-heterogeneity parameters, quartet statistic, site specific rate categories - check MP-, ME-, NJ-quartet code - quartet distances for trees: 2 trees (branch lengths=1) -> 2 matrices -> quart-topol easy to compute. - column aliasing on quartet level to speed up likelihood calculation - fix mem leakage in SPRNG (init) - implement '-m100', '-m50', '-mrel', '-mlrel', '-mext' '-m100' include Si, if P(Si) == 100% '-m50' include Si, if P(Si) > 50% [default] '-mrel' include Si, if Si congruent to all Sj (j<i), else stop (done) '-mlrel' include Si, if Si congruent to all Sj (j<i) '-mext' include Si, if Si congruent to all Sj in current Tree - check EPS creation in clustered likelihood mapping (done, SVG implemented) - check for output of additional top string on likelihood mapping triangle - commandline option to increase CHAR_PER_TREENODE DONE: 5.2 14.07.2004 - Version 5.2 !!! 5.3.rc16 05.12.2014 - sliding windows informative sites output in VisRec format implemented - use compiler switch USE_RECDETEC in puzzle.h to switch between RecDetec and VisRec format - implemented -statsonly flag to stop after alignment statistics - removed a few debug outputs 5.3.rc15 26.05.2014 - clean up of a number of compiler warnings 5.3.rc14 04.10.2013 - informative site counts added 5.3.rc13 13.08.2013 - informative sites (now correct double casts) 5.3.rc12 26.06.2013 - LG model added 5.3.rc11 27.02.2013 - autotools files updated - options -prefix= and -param= fixed for paths with space characters 5.3.rc10 03.01.2013 - nasty realloc error fixed, led to occasional crashes in the realloc of myrealloc due to data corruption - some debug messages removed or commented out 5.3.rc9 17.08.2012 - output of the number of nt/aa-pairs of two seqs in tstv output - writing aliinfo file behind savealiinfo_optn check (was writing almost empty file before) - some debug messages commented out 20.08.2012 - edit dist added to tstv output - a few compiler switches added to lcg64.c to prevent compile-time warnings 5.3.rc8 20.01.2012 - aliinfo output - split occurence 5.3.rc7 14.07.2010 - Increased CHAR_PER_TREENODE in ml2.c from 53 to 64. 5.3.rc6 30.09.2009 - informative site evaluation extended: count and output also variable but uninformative and fully informative site; discarded all taxon-wise informative counting except informative and uninformative (all others are equal to that of the alignment. - corrections in SVG: colors added; stroke removed in circles (too large due to the stroke line); coordinates corrected in plotlmpointcolor (x1000) 5.3.rc5 28.09.2009 - computation of pairwise edit distances (incl. gaps+ ambiguous chars as separate state / excl. sites with gaps or amiguous characters) and out put to *.editdist file (flag '-weditdist') - output format of *.rdstats streamlined - corrections in the help/usage output 29.09.2009 - ChangeLog file and TODOs checked and updated - exit character 'q' in cluster selection for likelihood mapping to get back to menu. 5.3.rc4 14.09.2009 - hint at ts/tv parameter input: "0.5 for JC69/F81" 22.09.2009 - evaluation of parsimony informative sites of the of alignment summary and per sequence - output to RecDetec stats file (-wrdsf: *.rdstats) 5.3.rc3 13.09.2009 - SVG code corrected: - using rotate instead on transform in rectangles, - using text-anchor="middle" to center, - order of x and y coordinates exchanged, - output of corner labels of upper triangle 5.3.rc2 30.08.2009 - SVG code scaled up from 0-1 to 0-1000 5.3.rc1 29.08.2008 - command line parameter, if click-started - little bug fix in KH-test if tree are equal - SVG output of likelihood mapping - outgroup option added for consensus CODE FREEZE for 5.3 =================== 5.2.pl21 11.04.2008 - file pointer error fixed (writing final check double) 5.2.pl20 07.04.2008 - check double added before and after binary block in binary quartet likelihood and quartet files 10.04.2008 - debug messages eliminated with compiler switch BININPUTDEBUG 5.2.pl19 26.03.2008 - bus error bug fixed, for -wsl bei consensus - plain split output added 5.2.pl18 20.10.2007 - site character frequencies output to *.sitefreqs 07.02.2008 - general substitution counts output to *.tstv for visualization with R, not only TS:TV - several cmdline options added to "-h" help. - default # of Gamma rates numcats = 4 (8 before). 5.2.pl17 18.10.2007 - output of character frequencies per site added currently to output.sitefreqs (for visualization with R) 20.10.2007 - superqp fixes added - re-read of names via *.subsetmat file corrected - consistency check *.subsetmat file added - handling of quartet info 15=(1111) for missing data 5.2.pl16 05.06.2007 - ts:tv data output added for visualization with R 5.2.pl15 27.09.2006 - quarted puzzling with only those quartets which contain the root taxon. - added: -rootstart, rootstart_optn - added: -rootqonly, rootquartsonly_optn 5.2.pl14 11.09.2006 - tp_exit added for click-started sessions - consensus debugged, many comments added 5.2.pl13 11.09.2006 - fix 'Unable to proceed' exits for *-click* - memory allocation for >257 species (works on 64bit) - output of quartet statistics sums added - likelihood mapping: output mappings per sequence 5.2.pl12 26.11.2005 - quartet statistics output to file added 5.2.pl11 21.11.2005 - sequence-wise likelihood mapping (almost) finished 22.11.2005 - final fixes in sequence-wise likelihood mapping 5.2.pl10 14.06.2005 - changing from hard wired voting scheme to command line controlled (-voting) - add '-voting' to '-hhh' 5.2.pl9 11.06.2005 - all different voting schemes (penalty, bonus, bonus-penalty) implemented for path/subtree normalized/absolute in pstep-tripl.c 14.06.2005 - memory leakage fixed (freeing node-penalty arrays) - weighted voting (partly =1*2 / partyl resolved =2*1) 5.2.pl8 18.03.2005 - "identical seq <- zero dist" remark outside loop fix 03.04.2005 - minedges array size: Maxspc -> Maxbrnch - checkquartet outputs the neighbor to the addition sequence besides the penalty neighbor 04.04.2005 - implementation of a penalty/bonus weighting method (triplbonus) 22.04.2005 - renamed mrca.c recur.c split.c triplbonus.c to pstep-*.c 04.05.2005 - ... fixed Makefile.am accordingly 05.06.2005 - pstep-tripl.c: triplet based subtree votings finished (currently with test output, todo path bonus) (switch off output: define QUIET) (switch on output: define PSTEP_TRIPL) 5.2.pl7 02.03.2005 - output of chi-square values added (for Ross) 5.2.pl6 28.01.2005 - trees in treefile don't contain LFs - continuous *.ptall file for parallel version - (c)-Notices updated to 2005 01.02.2004 - MPI bug fixed, called twice MPI_Finalized - tp_exit's fixed 5.2.pl5 21.10.2004 - RNG type output changed from stderr to stdout 27.01.2005 - new flags (mainly for parallel/batch processing) -wallptrees - write successively all puzzling trees to PREFIX.allquart -param=YYY - use file 'YYY' for parameter input (instead of stdin) 5.2.pl4 14.09.2004 - warnings fixed in SPRNG - autotools updated (automake 1.7) 17.09.2004 - NEXUS fprintfsortedpstrees: context checking, whether allowed - output of MLStep+PuzStep time only when doing QP - Output of inner branch lench added (-wqltb/-wqlta) 5.2.pl3 13.09.2004 - ME/NJ/MP quartets hidden by "QUART_TEST define" - menu item "Approximate quartet likelihood" replaced by "Quartet evaluation criterion" - 'identical sequence' comment added to report - likelihood mapping color added test-wise (COL_TEST) 14.09.2004 - comma added after last nexus split (for SplitsTree) - distributed for GfBS 2004 workshop, Stuttgart 5.2.pl2 01.09.2004 - NEXUS output refined (distances added) - temporariy '9' option added to menu for NEXUS - distributed for VEME 2004 workshop, Helsinki 5.2.pl1 12.07.2004 - quartet criteria ME, MP, NJ added (MP - to be finished) 11.08.2004 - quartet criteria added to cmdline/menu 13.08.2004 - treesort.c: taxon IDs in treestring 0..n-1 -> 1..n for NEXUS output - 'sed' corrected to 'sed -e'; 'sed' for VERSION corrected for empty VERSION and for the '.' -> '\.' 23.08.2004 - ml2.c: prepared for computation/output of posterior site rate likelihood for best site rate. Marked with 'posterior sitelhl' in the comment. - ml2.c: output fixed of invariant rates (Rates[0 - 1]) 29.08.2004 - NEXUS output (trees and splits) todo: simple files 30.08.2004 - doc/fig/Makefile deleted from configure.ac - compiler warnings fixed 5.2 12.07.2004 - Version 5.2 !!! NEW RELEASE =========== 5.2.rc17 14.07.2004 - Manual sources moved out of the package - numerous changes in the manual 5.2.rc16 12.07.2004 - Makefile.am: double distclean rule removed - fflush added before mygets() - because of Windows - manual spell-checked Loading INSTALL 100644 → 100755 +13 −15 Original line number Diff line number Diff line Copyright 1994, 1995, 1996, 1999, 2000, 2001 Free Software Foundation, Inc. Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002 Free Software Foundation, Inc. This file is free documentation; the Free Software Foundation gives unlimited permission to copy, distribute and modify it. Loading Loading @@ -71,8 +71,9 @@ Compilers and Options the `configure' script does not know about. Run `./configure --help' for details on some of the pertinent environment variables. You can give `configure' initial values for variables by setting them in the environment. You can do that on the command line like this: You can give `configure' initial values for configuration parameters by setting variables in the command line or in the environment. Here is an example: ./configure CC=c89 CFLAGS=-O2 LIBS=-lposix Loading Loading @@ -137,9 +138,10 @@ Specifying the System Type ========================== There may be some features `configure' cannot figure out automatically, but needs to determine by the type of host the package will run on. Usually `configure' can figure that out, but if it prints a message saying it cannot guess the host type, give it the automatically, but needs to determine by the type of machine the package will run on. Usually, assuming the package is built to be run on the _same_ architectures, `configure' can figure that out, but if it prints a message saying it cannot guess the machine type, give it the `--build=TYPE' option. TYPE can either be a short name for the system type, such as `sun4', or a canonical name which has the form: Loading @@ -151,20 +153,16 @@ where SYSTEM can have one of these forms: See the file `config.sub' for the possible values of each field. If `config.sub' isn't included in this package, then this package doesn't need to know the host type. need to know the machine type. If you are _building_ compiler tools for cross-compiling, you should use the `--target=TYPE' option to select the type of system they will produce code for. If you want to _use_ a cross compiler, that generates code for a platform different from the build platform, you should specify the host platform (i.e., that on which the generated programs will eventually be run) with `--host=TYPE'. In this case, you should also specify the build platform with `--build=TYPE', because, in this case, it may not be possible to guess the build platform (it sometimes involves compiling and running simple test programs, and this can't be done if the compiler is a cross compiler). platform different from the build platform, you should specify the "host" platform (i.e., that on which the generated programs will eventually be run) with `--host=TYPE'. Sharing Defaults ================ Loading Makefile.am 100644 → 100755 +2 −2 Original line number Diff line number Diff line Loading @@ -2,9 +2,9 @@ # Makefile.am # # # Part of TREE-PUZZLE 5.2 (July 2004) # Part of TREE-PUZZLE 5.2 (February 2005) # # (c) 2003-2004 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler # (c) 2003-2005 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler # (c) 1999-2003 by Heiko A. Schmidt, Korbinian Strimmer, # M. Vingron, and Arndt von Haeseler # (c) 1995-1999 by Korbinian Strimmer and Arndt von Haeseler Loading Loading
ChangeLog 100644 → 100755 +235 −7 Original line number Diff line number Diff line Loading @@ -5,18 +5,246 @@ ChangeLog Version date what has been changed TODO: missing quartet handling missing quartet counting in parallel case - positive 'penalties' for the non-penalized subtree - missing quartet handling - missing quartet counting in parallel case - primes-lcg64.c: int offset <=> unsigned MAXPRIMEOFFSET ??? (HAS) - user defined substitution matrices - more protein substitution matrices (cf. MrBayes) - AA models: Poisson, Equalin, mtMAM, rtREV, cpREV, BLOSUM, GTR, LG (Jones, Dayhoff, mtREV, WAG, VT exist already) - SeqFault by -wsl auf consensus - branchlength correction for ML evaluation of rooted usertrees (currently one of the two branchlengths at the root is lost when the root bifurcation is removed) - lcg64 -> mlfg (done?!?) - SPRNG for the sequential run (cmdline: number of runs/current number/seed), if parallel run are run sequentially - CHECK: continuous *.ptall file for parallel version - split rate-heterogeneity block in *.puzzle file order: rate-heterogeneity parameters, quartet statistic, site specific rate categories - check MP-, ME-, NJ-quartet code - quartet distances for trees: 2 trees (branch lengths=1) -> 2 matrices -> quart-topol easy to compute. - column aliasing on quartet level to speed up likelihood calculation - fix mem leakage in SPRNG (init) - implement '-m100', '-m50', '-mrel', '-mlrel', '-mext' '-m100' include Si, if P(Si) == 100% '-m50' include Si, if P(Si) > 50% [default] '-mrel' include Si, if Si congruent to all Sj (j<i), else stop (done) '-mlrel' include Si, if Si congruent to all Sj (j<i) '-mext' include Si, if Si congruent to all Sj in current Tree - check EPS creation in clustered likelihood mapping (done, SVG implemented) - check for output of additional top string on likelihood mapping triangle - commandline option to increase CHAR_PER_TREENODE DONE: 5.2 14.07.2004 - Version 5.2 !!! 5.3.rc16 05.12.2014 - sliding windows informative sites output in VisRec format implemented - use compiler switch USE_RECDETEC in puzzle.h to switch between RecDetec and VisRec format - implemented -statsonly flag to stop after alignment statistics - removed a few debug outputs 5.3.rc15 26.05.2014 - clean up of a number of compiler warnings 5.3.rc14 04.10.2013 - informative site counts added 5.3.rc13 13.08.2013 - informative sites (now correct double casts) 5.3.rc12 26.06.2013 - LG model added 5.3.rc11 27.02.2013 - autotools files updated - options -prefix= and -param= fixed for paths with space characters 5.3.rc10 03.01.2013 - nasty realloc error fixed, led to occasional crashes in the realloc of myrealloc due to data corruption - some debug messages removed or commented out 5.3.rc9 17.08.2012 - output of the number of nt/aa-pairs of two seqs in tstv output - writing aliinfo file behind savealiinfo_optn check (was writing almost empty file before) - some debug messages commented out 20.08.2012 - edit dist added to tstv output - a few compiler switches added to lcg64.c to prevent compile-time warnings 5.3.rc8 20.01.2012 - aliinfo output - split occurence 5.3.rc7 14.07.2010 - Increased CHAR_PER_TREENODE in ml2.c from 53 to 64. 5.3.rc6 30.09.2009 - informative site evaluation extended: count and output also variable but uninformative and fully informative site; discarded all taxon-wise informative counting except informative and uninformative (all others are equal to that of the alignment. - corrections in SVG: colors added; stroke removed in circles (too large due to the stroke line); coordinates corrected in plotlmpointcolor (x1000) 5.3.rc5 28.09.2009 - computation of pairwise edit distances (incl. gaps+ ambiguous chars as separate state / excl. sites with gaps or amiguous characters) and out put to *.editdist file (flag '-weditdist') - output format of *.rdstats streamlined - corrections in the help/usage output 29.09.2009 - ChangeLog file and TODOs checked and updated - exit character 'q' in cluster selection for likelihood mapping to get back to menu. 5.3.rc4 14.09.2009 - hint at ts/tv parameter input: "0.5 for JC69/F81" 22.09.2009 - evaluation of parsimony informative sites of the of alignment summary and per sequence - output to RecDetec stats file (-wrdsf: *.rdstats) 5.3.rc3 13.09.2009 - SVG code corrected: - using rotate instead on transform in rectangles, - using text-anchor="middle" to center, - order of x and y coordinates exchanged, - output of corner labels of upper triangle 5.3.rc2 30.08.2009 - SVG code scaled up from 0-1 to 0-1000 5.3.rc1 29.08.2008 - command line parameter, if click-started - little bug fix in KH-test if tree are equal - SVG output of likelihood mapping - outgroup option added for consensus CODE FREEZE for 5.3 =================== 5.2.pl21 11.04.2008 - file pointer error fixed (writing final check double) 5.2.pl20 07.04.2008 - check double added before and after binary block in binary quartet likelihood and quartet files 10.04.2008 - debug messages eliminated with compiler switch BININPUTDEBUG 5.2.pl19 26.03.2008 - bus error bug fixed, for -wsl bei consensus - plain split output added 5.2.pl18 20.10.2007 - site character frequencies output to *.sitefreqs 07.02.2008 - general substitution counts output to *.tstv for visualization with R, not only TS:TV - several cmdline options added to "-h" help. - default # of Gamma rates numcats = 4 (8 before). 5.2.pl17 18.10.2007 - output of character frequencies per site added currently to output.sitefreqs (for visualization with R) 20.10.2007 - superqp fixes added - re-read of names via *.subsetmat file corrected - consistency check *.subsetmat file added - handling of quartet info 15=(1111) for missing data 5.2.pl16 05.06.2007 - ts:tv data output added for visualization with R 5.2.pl15 27.09.2006 - quarted puzzling with only those quartets which contain the root taxon. - added: -rootstart, rootstart_optn - added: -rootqonly, rootquartsonly_optn 5.2.pl14 11.09.2006 - tp_exit added for click-started sessions - consensus debugged, many comments added 5.2.pl13 11.09.2006 - fix 'Unable to proceed' exits for *-click* - memory allocation for >257 species (works on 64bit) - output of quartet statistics sums added - likelihood mapping: output mappings per sequence 5.2.pl12 26.11.2005 - quartet statistics output to file added 5.2.pl11 21.11.2005 - sequence-wise likelihood mapping (almost) finished 22.11.2005 - final fixes in sequence-wise likelihood mapping 5.2.pl10 14.06.2005 - changing from hard wired voting scheme to command line controlled (-voting) - add '-voting' to '-hhh' 5.2.pl9 11.06.2005 - all different voting schemes (penalty, bonus, bonus-penalty) implemented for path/subtree normalized/absolute in pstep-tripl.c 14.06.2005 - memory leakage fixed (freeing node-penalty arrays) - weighted voting (partly =1*2 / partyl resolved =2*1) 5.2.pl8 18.03.2005 - "identical seq <- zero dist" remark outside loop fix 03.04.2005 - minedges array size: Maxspc -> Maxbrnch - checkquartet outputs the neighbor to the addition sequence besides the penalty neighbor 04.04.2005 - implementation of a penalty/bonus weighting method (triplbonus) 22.04.2005 - renamed mrca.c recur.c split.c triplbonus.c to pstep-*.c 04.05.2005 - ... fixed Makefile.am accordingly 05.06.2005 - pstep-tripl.c: triplet based subtree votings finished (currently with test output, todo path bonus) (switch off output: define QUIET) (switch on output: define PSTEP_TRIPL) 5.2.pl7 02.03.2005 - output of chi-square values added (for Ross) 5.2.pl6 28.01.2005 - trees in treefile don't contain LFs - continuous *.ptall file for parallel version - (c)-Notices updated to 2005 01.02.2004 - MPI bug fixed, called twice MPI_Finalized - tp_exit's fixed 5.2.pl5 21.10.2004 - RNG type output changed from stderr to stdout 27.01.2005 - new flags (mainly for parallel/batch processing) -wallptrees - write successively all puzzling trees to PREFIX.allquart -param=YYY - use file 'YYY' for parameter input (instead of stdin) 5.2.pl4 14.09.2004 - warnings fixed in SPRNG - autotools updated (automake 1.7) 17.09.2004 - NEXUS fprintfsortedpstrees: context checking, whether allowed - output of MLStep+PuzStep time only when doing QP - Output of inner branch lench added (-wqltb/-wqlta) 5.2.pl3 13.09.2004 - ME/NJ/MP quartets hidden by "QUART_TEST define" - menu item "Approximate quartet likelihood" replaced by "Quartet evaluation criterion" - 'identical sequence' comment added to report - likelihood mapping color added test-wise (COL_TEST) 14.09.2004 - comma added after last nexus split (for SplitsTree) - distributed for GfBS 2004 workshop, Stuttgart 5.2.pl2 01.09.2004 - NEXUS output refined (distances added) - temporariy '9' option added to menu for NEXUS - distributed for VEME 2004 workshop, Helsinki 5.2.pl1 12.07.2004 - quartet criteria ME, MP, NJ added (MP - to be finished) 11.08.2004 - quartet criteria added to cmdline/menu 13.08.2004 - treesort.c: taxon IDs in treestring 0..n-1 -> 1..n for NEXUS output - 'sed' corrected to 'sed -e'; 'sed' for VERSION corrected for empty VERSION and for the '.' -> '\.' 23.08.2004 - ml2.c: prepared for computation/output of posterior site rate likelihood for best site rate. Marked with 'posterior sitelhl' in the comment. - ml2.c: output fixed of invariant rates (Rates[0 - 1]) 29.08.2004 - NEXUS output (trees and splits) todo: simple files 30.08.2004 - doc/fig/Makefile deleted from configure.ac - compiler warnings fixed 5.2 12.07.2004 - Version 5.2 !!! NEW RELEASE =========== 5.2.rc17 14.07.2004 - Manual sources moved out of the package - numerous changes in the manual 5.2.rc16 12.07.2004 - Makefile.am: double distclean rule removed - fflush added before mygets() - because of Windows - manual spell-checked Loading
INSTALL 100644 → 100755 +13 −15 Original line number Diff line number Diff line Copyright 1994, 1995, 1996, 1999, 2000, 2001 Free Software Foundation, Inc. Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002 Free Software Foundation, Inc. This file is free documentation; the Free Software Foundation gives unlimited permission to copy, distribute and modify it. Loading Loading @@ -71,8 +71,9 @@ Compilers and Options the `configure' script does not know about. Run `./configure --help' for details on some of the pertinent environment variables. You can give `configure' initial values for variables by setting them in the environment. You can do that on the command line like this: You can give `configure' initial values for configuration parameters by setting variables in the command line or in the environment. Here is an example: ./configure CC=c89 CFLAGS=-O2 LIBS=-lposix Loading Loading @@ -137,9 +138,10 @@ Specifying the System Type ========================== There may be some features `configure' cannot figure out automatically, but needs to determine by the type of host the package will run on. Usually `configure' can figure that out, but if it prints a message saying it cannot guess the host type, give it the automatically, but needs to determine by the type of machine the package will run on. Usually, assuming the package is built to be run on the _same_ architectures, `configure' can figure that out, but if it prints a message saying it cannot guess the machine type, give it the `--build=TYPE' option. TYPE can either be a short name for the system type, such as `sun4', or a canonical name which has the form: Loading @@ -151,20 +153,16 @@ where SYSTEM can have one of these forms: See the file `config.sub' for the possible values of each field. If `config.sub' isn't included in this package, then this package doesn't need to know the host type. need to know the machine type. If you are _building_ compiler tools for cross-compiling, you should use the `--target=TYPE' option to select the type of system they will produce code for. If you want to _use_ a cross compiler, that generates code for a platform different from the build platform, you should specify the host platform (i.e., that on which the generated programs will eventually be run) with `--host=TYPE'. In this case, you should also specify the build platform with `--build=TYPE', because, in this case, it may not be possible to guess the build platform (it sometimes involves compiling and running simple test programs, and this can't be done if the compiler is a cross compiler). platform different from the build platform, you should specify the "host" platform (i.e., that on which the generated programs will eventually be run) with `--host=TYPE'. Sharing Defaults ================ Loading
Makefile.am 100644 → 100755 +2 −2 Original line number Diff line number Diff line Loading @@ -2,9 +2,9 @@ # Makefile.am # # # Part of TREE-PUZZLE 5.2 (July 2004) # Part of TREE-PUZZLE 5.2 (February 2005) # # (c) 2003-2004 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler # (c) 2003-2005 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler # (c) 1999-2003 by Heiko A. Schmidt, Korbinian Strimmer, # M. Vingron, and Arndt von Haeseler # (c) 1995-1999 by Korbinian Strimmer and Arndt von Haeseler Loading
