Commit a3b90a3a authored by Liubov Chuprikova's avatar Liubov Chuprikova
Browse files

Provide upstream sample_data in a separate package

parent 176db132

debian/control

+14 −1
Original line number Diff line number Diff line
@@ -27,17 +27,30 @@ Architecture: any 
Depends: ${python3:Depends},

         ${shlibs:Depends},

         ${misc:Depends},

         python3-setuptools,

         default-jre,

         bowtie2,

         freebayes,

         ncbi-blast+,

         pilon,

         racon,

         samtools,

         spades

Recommends: unicycler-data

Description: hybrid assembly pipeline for bacterial genomes

 Unicycler is an assembly pipeline for bacterial genomes. It can assemble

 Illumina-only read sets where it functions as a SPAdes-optimiser. It can

 also assembly long-read-only sets (PacBio or Nanopore) where it runs a

 miniasm+Racon pipeline. For the best possible assemblies, give it both

 Illumina reads and long reads, and it will conduct a hybrid assembly.



Package: unicycler-data

Architecture: all

Depends: ${misc:Depends}

Description: hybrid assembly pipeline for bacterial genomes (data package)

 Unicycler is an assembly pipeline for bacterial genomes. It can assemble

 Illumina-only read sets where it functions as a SPAdes-optimiser. It can

 also assembly long-read-only sets (PacBio or Nanopore) where it runs a

 miniasm+Racon pipeline. For the best possible assemblies, give it both

 Illumina reads and long reads, and it will conduct a hybrid assembly.

 .

 This package contains architecture independent data for unicycler.

debian/rules

+9 −7
Original line number Diff line number Diff line
@@ -2,20 +2,16 @@ 


# DH_VERBOSE := 1





# Build time tests are flaky

# export DH_BUILD_MAINT_OPTIONS=nocheck

# But rather run the tests and ignore errors than no tests at all.

# Thus we might have a look into build-logs to see what is failing



export DEB_BUILD_MAINT_OPTIONS=hardening=+all



include /usr/share/dpkg/default.mk



export PYBUILD_NAME=unicycler



# copy all nacessary data before testing and make clean after the testing

export PYBUILD_BEFORE_TEST=cp -a unicycler-runner.py {build_dir}; \

	cp -a unicycler/cpp_functions.so {build_dir}/unicycler; \

	cp -r sample_data {build_dir}

	cp -a sample_data {build_dir}

export PYBUILD_AFTER_TEST=rm {build_dir}/unicycler-runner.py; \

	rm -r {build_dir}/sample_data; \

	rm -r {build_dir}/unicycler/__pycache__
@@ -33,3 +29,9 @@ override_dh_auto_clean: 
override_dh_auto_build:

	make

	dh_auto_build



override_dh_auto_install:

	dh_auto_install --destdir=debian/$(PYBUILD_NAME)



override_dh_python3:

	dh_python3 --no-ext-rename

debian/unicycler-data.install

0 → 100644
+1 −0
Original line number Diff line number Diff line 
sample_data /usr/share/unicycler-data