debian/changelog

@@ -2,4 +2,4 @@ unicycler (0.4.7+dfsg-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #908599)
 
- -- Andreas Tille <tille@debian.org>  Thu, 06 Sep 2018 08:32:49 +0200
+ -- Liubov Chuprikova <chuprikovalv@gmail.com>  Tue, 11 Sep 2018 20:27:33 +0200

debian/control

 Source: unicycler
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille@debian.org>
+Uploaders: Andreas Tille <tille@debian.org>,
+           Liubov Chuprikova <chuprikovalv@gmail.com>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 11~),
@@ -16,7 +17,7 @@ Build-Depends: debhelper (>= 11~),
                spades,
                libseqan2-dev,
                zlib1g-dev
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/unicycler
 Vcs-Git: https://salsa.debian.org/med-team/unicycler.git
 Homepage: https://github.com/rrwick/Unicycler

debian/rules

@@ -4,7 +4,9 @@
 
 
 # Build time tests are flaky
-export DH_BUILD_MAINT_OPTIONS=nocheck
+# export DH_BUILD_MAINT_OPTIONS=nocheck
+# But rather run the tests and ignore errors than no tests at all.
+# Thus we might have a look into build-logs to see what is failing
 
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
@@ -32,11 +34,11 @@ override_dh_auto_build:
 	make
 	dh_auto_build
 
-override_dh_link:
-	dh_link
-	# symlink versioned shared lib to make it found
-	# FIXME: actually the cpp_functions*.so libs for different Python3 versions are identical!
-	#        This should be checked and normalised
-	for pyldir in `dirname $$(find debian -name "cpp_functions*.so") | sort` ; do \
-	    ln -s `basename $$(find debian -name "cpp_functions*.so")` $${pyldir}/cpp_functions.so ; \
-	done
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	BUILDPATH=$(shell pybuild --print build_dir --interpreter python3) ; \
+	ln -s $(CURDIR)/sample_data $${BUILDPATH} ; \
+	ln -s $(CURDIR)/unicycler-runner.py $${BUILDPATH} ; \
+	cp -a unicycler/*.so $${BUILDPATH}/$(PYBUILD_NAME) ; \
+	PYTHONPATH=$${BUILDPATH}/$(PYBUILD_NAME) dh_auto_test || true
+endif