New upstream version 1.21.0+ds (49036d91) · Commits · Debian Med / vg

.dockerignore

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		---
		name: Report a Bug
		about: Report a bug that causes vg to crash or otherwise behave incorrectly
		title: ''
		labels: ''
		assignees: ''

		---

		<!--
		Please answer the following questions about your bug.

		If you copy commands or output from your terminal, please place the text in its own paragraph, surrounded by lines of three backticks.

		```
		Like this.
		```

		-->

		1. What were you trying to do?


		2. What did you want to happen?


		3. What actually happened?


		4. If you got a line like `Stack trace path: /somewhere/on/your/computer/stacktrace.txt`, please copy-paste the contents of that file here:

		```
		Place stacktrace here.
		```

		5. What data and command can the vg dev team use to make the problem happen?


		6. What does running `vg version` say?

		```
		Place vg version output here
		```

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		---
		name: Support Request
		about: Get help installing or using vg, or get questions answered
		title: ''
		labels: ''
		assignees: ''

		---

		PLEASE DO NOT MAKE SUPPORT REQUESTS HERE

		Please the Biostars forum instead:

		https://www.biostars.org/p/new/post/?tag_val=vg

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		@@ -42,7 +42,7 @@ test-job:
		# Run in parallel, setting CI_NODE_INDEX and CI_NODE_TOTAL
		# We will find our share of tests from vgci/test-list.txt and run them
		# We ought to run one job per test, but we can wrap around.
		parallel: 19
		parallel: 16
		script:
		- docker pull "quay.io/vgteam/vg:ci-${CI_PIPELINE_IID}-${CI_COMMIT_SHA}"
		- docker tag "quay.io/vgteam/vg:ci-${CI_PIPELINE_IID}-${CI_COMMIT_SHA}" vgci-docker-vg-local

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		@@ -22,9 +22,6 @@
		[submodule "sha1"]
		path = deps/sha1
		url = https://github.com/vog/sha1.git
		[submodule "protobuf"]
		path = deps/protobuf
		url = https://github.com/google/protobuf.git
		[submodule "gcsa2"]
		path = deps/gcsa2
		url = https://github.com/jltsiren/gcsa2.git
		@@ -39,7 +36,7 @@
		url = https://github.com/sparsehash/sparsehash.git
		[submodule "gfakluge"]
		path = deps/gfakluge
		url = https://github.com/edawson/gfakluge.git
		url = https://github.com/vgteam/gfakluge.git
		[submodule "deps/DYNAMIC"]
		path = deps/DYNAMIC
		url = https://github.com/vgteam/DYNAMIC
		@@ -113,3 +110,18 @@
		[submodule "deps/libbdsg"]
		path = deps/libbdsg
		url = https://github.com/vgteam/libbdsg.git
		[submodule "deps/xg"]
		path = deps/xg
		url = https://github.com/vgteam/xg.git
		[submodule "deps/gbwtgraph"]
		path = deps/gbwtgraph
		url = https://github.com/jltsiren/gbwtgraph.git
		[submodule "deps/ips4o"]
		path = deps/ips4o
		url = https://github.com/vgteam/ips4o.git
		[submodule "deps/mmmultimap"]
		path = deps/mmmultimap
		url = https://github.com/ekg/mmmultimap.git
		[submodule "vgteam_bbhash"]
		path = deps/BBHash
		url = https://github.com/vgteam/BBHash.git