debian/README.test

-Notes on how this package can be tested.
-────────────────────────────────────────
-
-This package can be tested by running the provided test:
-
-    sh run-unit-test
-
-in order to confirm its integrity.

debian/compat

-11

debian/control

 Source: vg
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>
-Build-Depends: debhelper (>= 11~),
+Section: science
+Priority: optional
+Build-Depends: debhelper-compat (= 12),
                pv,
-	       pigz,
+               pigz,
                bsdmainutils,
                zlib1g-dev,
                rs,
                libffi-dev,
-	       bwa,
-	       protobuf-compiler,
-	       libprotoc-dev,
-	       libprotobuf-dev,
-	       libjansson-dev,
-	       libbz2-dev,
-	       libncurses5-dev,
-	       automake,
-	       libtool,
-	       jq,
-	       samtools,
-	       unzip,
-	       redland-utils,
-	       librdf-dev,
-	       cmake,
-	       pkg-config,
-	       bc,
-	       gtk-doc-tools,
-	       raptor2-utils,
-	       rasqal-utils,
-	       bison,
-	       flex,
-	       gawk,
-	       libgoogle-perftools-dev,
-	       liblz4-dev,
-	       liblzma-dev,
-	       libcairo2-dev,
-	       libpixman-1-dev,
-	       libffi-dev,
-	       libssw-dev,
-	       librocksdb-dev,
-	       libdeflate-dev,
+               bwa,
+               protobuf-compiler,
+               libprotoc-dev,
+               libprotobuf-dev,
+               libjansson-dev,
+               libbz2-dev,
+               libncurses5-dev,
+               automake,
+               libtool,
+               jq,
+               samtools,
+               unzip,
+               redland-utils,
+               librdf-dev,
+               cmake,
+               pkg-config,
+               bc,
+               gtk-doc-tools,
+               raptor2-utils,
+               rasqal-utils,
+               bison,
+               flex,
+               gawk,
+               libgoogle-perftools-dev,
+               liblz4-dev,
+               liblzma-dev,
+               libcairo2-dev,
+               libpixman-1-dev,
+               libssw-dev,
+               librocksdb-dev,
+               libdeflate-dev,
                libboost-program-options-dev,
                libjemalloc-dev,
                libbackward-cpp-dev,
                elfutils,
                libdw-dev,
                libelf-dev,
-               samtools,
                libraptor2-dev,
                libsparsehash-dev,
                rapidjson-dev,
@@ -56,17 +54,18 @@ Build-Depends: debhelper (>= 11~),
                libfastahack-dev,
                fastahack
 #              libvcflib-dev (>= 1.0),
-#	       libhts-dev
-#	       libsdsl-dev,
+#              libhts-dev
+#              libsdsl-dev,
 #              libvw-dev,
-Standards-Version: 4.2.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/vg
 Vcs-Git: https://salsa.debian.org/med-team/vg.git
 Homepage: https://github.com/vgteam/vg#vg
 
 Package: vg
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Breaks: cgvg
 Description: tools for working with genome variation graphs
  variation graph data structures, interchange formats, alignment, genotyping,
@@ -75,9 +74,9 @@ Description: tools for working with genome variation graphs
  Variation graphs provide a succinct encoding of the sequences of many genomes.
  A variation graph (in particular as implemented in vg) is composed of:
  .
- - nodes, which are labeled by sequences and ids
- - edges, which connect two nodes via either of their respective ends
- - paths, describe genomes, sequence alignments, and annotations (such as gene
+  - nodes, which are labeled by sequences and ids
+  - edges, which connect two nodes via either of their respective ends
+  - paths, describe genomes, sequence alignments, and annotations (such as gene
    models and transcripts) as walks through nodes connected by edges
  .
  This model is similar to a number of sequence graphs that have been used in

debian/copyright

@@ -30,7 +30,7 @@ Copyright: 2012-2015, Timo Marjoniemi
 License: LGPL-2.1+
 
 Files: ./ontology/owl2xhtml.xsl
-Copyright: 2008, Andreas Radinger and Martin Hepp, Bundeswehr University Munich, http:www.unibw.de/ebusiness/                                         
+Copyright: 2008, Andreas Radinger and Martin Hepp, Bundeswehr University Munich, http:www.unibw.de/ebusiness/
   2014, UniProt consortium, http:www.uniprot.org
   2016, SIB Swiss Institute of Bioinformatics, http:www.isb-sib.ch
 License: LGPL
@@ -81,4 +81,4 @@ License: MIT
  COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
  IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
  CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
- 
+