New upstream version 2.3.0+dfsg

vmweb.pdf

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HLE

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\documentclass[11pt]{article}

\usepackage{a4wide}

\pagestyle{empty}

\begin{document}

\input{Dataflow.inc}

\noindent The dataflow in \emph{Vmatch}. 

The programs

are shown in ellipses. The inputs are the database

and the query sequences and the alphabet transformation,

represented by rectangles. At the center of all

computations the persistent index is shown. All other

rectangles represent the different kinds of output.

\begin{center}

\centerline{\box\graph}

\end{center}

\end{document}

vmwebfiles=Dataflowfig.pdf\

           AboKurOhl2004.pdf\

           AboKurOhl2002.pdf\

           BreKurWal2002.pdf\

           ChoSchleKurGie2004.pdf\

           FitGarKucKurMyeOttSleVitZemMcc2002.pdf\

           KurChoOhlSchleStoGie2001.pdf\

           HoehKurOhl2002.pdf\

           GraeStrKurSte2001.pdf\

           BecStroHomGieKur2004.pdf\

           KrueSczKurGie2004.pdf\

           virtman.pdf

PAPERS=${WORK}/archive-etc/own-papers

SERVER=vmatchserver

WWWBASEDIR=/var/www/html

all:vmweb.pdf vmweb.tgz

vmweb.pdf:vmweb.tex introduction.inc

	latexmk vmweb

introduction.inc:../virtman.tex introexclude

	extractpart.pl introduction ../virtman.tex |\

               grep -v -f introexclude |\

               sed -e 's/\\subsection\*{The parts/\\section*{The parts/' | \

               perl -pe 's/\\cite{ABO:KUR:OHL:2004}\.\%\%second/(Abouelhoda, Kurtz, Ohlebusch 2004)./' | \

               perl -pe 's/\\cite{(.*)}[\.,]?/\n\\bibentry{\1}\n/' > $@

Dataflow.inc:../Dataflow.pic

	pic -t ../Dataflow.pic > $@

index.html:vmweb.tex vmweb.pdf introduction.inc replace-header.rb replace-par.rb

	htlatex vmweb.tex "xhtml, charset=utf-8" " -cunihtf -utf8"

	cat vmweb.html | replace-header.rb | \

                         replace-par.rb | \

                         sed -e 's/CONTENT=/content=/' \

                             -e 's/ALT=/alt=/' > $@

validate:index.html xhtml-lat1.ent xhtml-symbol.ent xhtml-special.ent xhtml1-transitional.dtd

	cat index.html | sed -e 's/\"http:\/\/www.w3.org\/TR\/xhtml1\/DTD\//\"/' > .tmp.html

	xmllint --valid --noout .tmp.html

	rm -f .tmp.html

# also run validation on https://validator.w3.org/

Dataflowfig.dvi:Dataflowfig.tex Dataflow.inc

	latex Dataflowfig.tex

Dataflowfig.pdf:Dataflowfig.dvi

	dvipdf $<

vmweb.tgz:matchgraph.gif ${vmwebfiles} index.html vmweb.pdf

	tar -cvzf $@ matchgraph.gif ${vmwebfiles} index.html vmweb.pdf

virtman.pdf:

	cp ../virtman.pdf .

AboKurOhl2004.pdf:

	cp ${PAPERS}/$@ .

AboKurOhl2002.pdf:

	cp ${PAPERS}/$@ .

BreKurWal2002.pdf:

	cp ${PAPERS}/$@ .

ChoSchleKurGie2004.pdf:

	cp ${PAPERS}/$@ .

FitGarKucKurMyeOttSleVitZemMcc2002.pdf:

	cp ${PAPERS}/$@ .

KurChoOhlSchleStoGie2001.pdf:

	cp ${PAPERS}/$@ .

HoehKurOhl2002.pdf:

	cp ${PAPERS}/$@ .

GraeStrKurSte2001.pdf:

	cp ${PAPERS}/$@ .

KrueSczKurGie2004.pdf:

	cp ${PAPERS}/$@ .

BecStroHomGieKur2004.pdf:

	cp ${PAPERS}/$@ .

installwww:

	rsync -rv index.html vmweb.css download.html virtman.pdf vmweb.pdf matchgraph.gif distributions $(SERVER):$(WWWBASEDIR)

clean:

	rm -f *.toc *.ilg *.out *.idx *.ind *.dvi *.ps *.log *.aux

	rm -f *.bbl *.blg

	rm -f vmweb.4ct vmweb.xref vmweb.tmp vmweb.lg vmweb.idv vmweb.html vmweb.4tc vmweb.fls vmweb.fdb_latexmk

	rm -f comment.cut introduction.inc

	rm -f Dataflow.inc 

	rm -f ${vmwebfiles}

git push kurtz@genometools.org:/home/kurtz/lscsa/vstree.git sk