initial packaging

vmatch (2.3.0+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #)

 -- Sascha Steinbiss <satta@debian.org>  Mon, 30 Dec 2019 14:49:09 +0100

Source: vmatch

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Sascha Steinbiss <satta@debian.org>

Section: science

Priority: optional

Build-Depends: debhelper (>= 12),

               debhelper-compat (= 12),

               genometools,

               libgenometools0-dev,

               zlib1g-dev,

               libbz2-dev,

               asciidoctor

Standards-Version: 4.4.1

Vcs-Browser: https://salsa.debian.org/med-team/vmatch

Vcs-Git: https://salsa.debian.org/med-team/vmatch.git

Homepage: http://www.vmatch.de

Package: vmatch

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: large scale sequence analysis software

 Vmatch is a versatile software tool for efficiently solving large scale

 sequence matching tasks. It subsumes the software tool REPuter, but is

 much more general, with a very flexible user interface, and improved space

 and time requirements.

Package: libvmatch-dev

Architecture: any

Section: libdevel

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: development headers and static library for Vmatch

 This package contains C development headers and a static library to

 build custom programs utilizing Vmatch.

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

Upstream-Name: Vmatch

Source: https://github.com/genometools/vstree

Files-Excluded: src/lib-homann

                src/include/libpssm.h

                src/Makedef

                src/doc/WWW/distributions

                src/doc/*.so.*

Files: *

Copyright: © 2000-2006 Stefan Kurtz <kurtz@zbh.uni-hamburg.de>  

License: ISC

License: ISC

 Permission to use, copy, modify, and distribute this software for any

 purpose with or without fee is hereby granted, provided that the above

 copyright notice and this permission notice appear in all copies.

 .

 THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES

 WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF

 MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR

 ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES

 WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN

 ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF

 OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE

src/lib/libfiles/*.a /usr/lib

src/include/*.h /usr/include/vmatch

src/include/*.pr /usr/include/vmatch

--- a/src/Makefile

+++ b/src/Makefile

@@ -6,9 +6,8 @@

   BIT=32bit

 endif

 VERSION:="`cat $(CURDIR)/VERSION`"

-SYSTEMNAME:="$(SYSTEM)_$(MACHINE)"

-VMATCHDISTBASENAME:="vmatch-$(VERSION)-$(SYSTEMNAME)-$(BIT)"

-DISTDIR:="$(CURDIR)/dist/$(SYSTEMNAME)"

+VMATCHDISTBASENAME:="vmatch"

+DISTDIR:="$(CURDIR)/dist"

 VMATCHDISTDIR:="$(DISTDIR)/$(VMATCHDISTBASENAME)"

 SELECTDIR=SELECT

--- a/src/Makedef-linux-gcc

+++ b/src/Makedef-linux-gcc

@@ -57,8 +57,8 @@

 # the libraries implemented in the vstree package

-PATHEND=32bit

-LIBBASEDIR=lib/${CONFIGGUESS}/${PATHEND}

+PATHEND=libfiles

+LIBBASEDIR=lib/${PATHEND}

 COMPILEDIRPREFIX=../${LIBBASEDIR}

 EXECDIRPREFIX=../${LIBBASEDIR}

 LIBDIR=${VSTREEBASEDIR}/${LIBBASEDIR}

--- a/src/Makedef-linux-gcc-64

+++ b/src/Makedef-linux-gcc-64

@@ -61,8 +61,8 @@

 # the libraries implemented in the vstree package

-PATHEND=64bit

-LIBBASEDIR=lib/${CONFIGGUESS}/${PATHEND}

+PATHEND=libfiles

+LIBBASEDIR=lib/${PATHEND}

 COMPILEDIRPREFIX=../${LIBBASEDIR}

 EXECDIRPREFIX=../${LIBBASEDIR}

 LIBDIR=${VSTREEBASEDIR}/${LIBBASEDIR}