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debian/copyright
View file @ fe111553
......@@ -4,13 +4,101 @@ Source: https://github.com/genometools/vstree
Files-Excluded: src/lib-homann
src/include/libpssm.h
src/Makedef
src/doc/WWW/distributions
src/doc/WWW
src/doc/*.so.*
src/testdata/swissSmall
Files: *
Copyright: © 2000-2006 Stefan Kurtz <kurtz@zbh.uni-hamburg.de>
Copyright: (C) 2000-2006 Stefan Kurtz <kurtz@zbh.uni-hamburg.de>
(C) 2000-2016 LScSA-Software GmbH
License: ISC
Files: src/include/functrace.h
Copyright: (C) 2003-2004 Gordon Gremme <gremme@zbh.uni-hamburg.de>
License: ISC
Files: src/include/genfile.h
Copyright: (C) 2005 Gordon Gremme <gremme@zbh.uni-hamburg.de>
License: ISC
Files: src/include/xmlindent.h
Copyright: (C) 2004-2005 Gordon Gremme <gremme@zbh.uni-hamburg.de>
License: ISC
Files: src/kurtz-basic/redblack.c
Copyright: 1995, 1996, 1997, 2000 Free Software Foundation, Inc.
License: LGPL-2.1+
The GNU C Library is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation; either version 2.1, or (at your option)
any later version.
.
The GNU C Library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
.
You should have received a copy of the GNU Lesser General Public License along
with this program; if not, write to the Free Software Foundation,
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
.
On Debian systems, the complete text of the GNU Lesser General Public
License version 2.1 can be found in ‘/usr/share/common-licenses/LGPL-2.1’.
Comment: With modifications by Vmatch authors.
Files: src/bin/config-guess.sh
Copyright: (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
2000, 2001, 2002, 2003 Free Software Foundation, Inc.
License: GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
.
As a special exception to the GNU General Public License, if you
distribute this file as part of a program that contains a
configuration script generated by Autoconf, you may include it under
the same distribution terms that you use for the rest of that program.
.
On Debian systems, the complete text of the GNU General Public
License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
Files: src/bin/install.sh
Copyright: (C) 1994 X Consortium
License: X11
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to
deal in the Software without restriction, including without limitation the
rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
sell copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
.
The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
.
Except as contained in this notice, the name of the X Consortium shall not
be used in advertising or otherwise to promote the sale, use or other deal-
ings in this Software without prior written authorization from the X Consor-
tium.
.
FSF changes to this file are in the public domain.
License: ISC
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
......
debian/libvmatch-dev.install
View file @ fe111553
......@@ -2,4 +2,8 @@ src/lib/libfiles/*.a /usr/lib
src/include/*.h /usr/include/vmatch
src/include/*.pr /usr/include/vmatch
src/Vmatch/*.pr /usr/include/vmatch
src/Vmatch/SELECT /usr/share/vmatch
src/Vmatch/SELECT/*.c /usr/share/vmatch/SELECT
src/Vmatch/SELECT/*.h /usr/share/vmatch/SELECT
src/Vmatch/SELECT/Shareddef /usr/share/vmatch/SELECT
src/Vmatch/SELECT/*akefile* /usr/share/vmatch/SELECT
src/Vmatch/SELECT/Mk* /usr/share/vmatch/SELECT
debian/rules
View file @ fe111553
#!/usr/bin/make -f
include /usr/share/dpkg/default.mk
BITS:=$(shell dpkg-architecture | fgrep DEB_TARGET_ARCH_BITS= | cut -f 2 -d'=')
ifeq ($(BITS),64)
VSTREE_ARCH:=linux-gcc-64
else
VSTREE_ARCH:=linux-gcc
endif
DH_VERBOSE := 1
export LC_ALL=C.UTF-8
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
......@@ -13,7 +23,7 @@ override_dh_auto_clean:
rm -rf debian/man
override_dh_auto_build:
cd src && mklink.sh linux-gcc-64
cd src && mklink.sh $(VSTREE_ARCH)
cd src && make licensemanager=no $*
override_dh_auto_install:
......
debian/vmatch.install
View file @ fe111553
......@@ -12,3 +12,4 @@ src/dist/vmatch/vseqselect /usr/bin
src/dist/vmatch/vstree2tex /usr/bin
src/dist/vmatch/vsubseqselect /usr/bin
src/dist/vmatch/TRANS /usr/share/vmatch
src/Vmatch/SELECT/*.so /usr/lib/vmatch/SELECT
src/doc/WWW/.ispell_american deleted 100644 → 0
View file @ d5473510
EMBL
Fasta
Genbank
Gzipped
Kurtz
SWISSPROT
Vmatch
postprocessing
pt
AtGDB
barleypop
biophys
cDNA
dataflow
Dataflowfig
DJ
duesseldorf
edu
Fernandes
Gbp
GCB
genalyzer
GeneChip
genomic
gif
GL
html
hypa
iastate
img
matchgraph
mga
oligo
patternsearch
PatternSearch
pdf
PDF
php
PlantGDB
possumsearch
PossumSearch
RescueMu
RSA
rsat
splicenest
transposons
virtman
vmatchlic
vmweb
vrac
Walbot
Xenopus
zmdb
ac
AMD
Arabidopsis
BarleyBase
bibiserv
bielefeld
Bioinformatics
biotools
cgi
commolbio
Debian
ESTs
GenBank
hamburg
Helden
http
HyPa
KPATH
kurtz
latexonly
mkvtree
molgen
mpg
Multimat
oligos
org
OSX
pl
plantgdb
PowerPC
Promide
Rahmann
Redhat
reputer
REPuter
Sparc
SpliceNest
src
SuSe
Sven
techfak
thaliana
ulb
vmatch
www
zbh
Zea
ASRP
GSSanalysis
laevis
meningioma
microarray
micromatches
miRNA
mRNA
mutransposon
Transposon
ABR
AKA
ALI
ALT
ALV
AME
ANG
AQU
ARN
Affymetrix
Agave
Apr
Aureobasidium
Azadirachta
BAI
BAL
BEC
BEH
BEI
BEL
BER
BLA
BLI
BLO
BOD
BOH
BOR
BOU
BOV
BRE
BRI
BRO
BRU
BUC
BUE
BioExtract
Biopieces
BlastP
CAS
CAV
CEV
CHA
CHAU
CHE
CHI
CHO
CHOU
CHU
CLA
CLO
COH
COL
CRISPRFinder
CRISPRdatabase
CRISPRfinder
CRISPRs
CRO
CUL
Chlorophyceae
Chs
CrossLink
Cscript
CurrentUsage
DAR
DAS
DAV
DEA
DEE
DES
DEZ
DHA
DIBO
DIC
DIJ
DNAVis
DOL
DOO
DOR
DUC
DUM
DUR
EBR
EIS
ELD
ELL
ENG
ERI
EST
Ecoli
FANTOM
FAU
FER
FESCH
FIC
FIE
FLE
FOF
FOS
FRE
Floydiella
Frankia
GAE
GAO
GAR
GAU
GEN
GEO
GER
GES
GEY
GIE
GLA
GLAE
GNF
GNI
GOL
GOM
GON
GOS
GRAE
GRE
GRI
GRO
GRU
GU
GUA
Genome
GenomeThreader
Gepard
GmbH
Graminella
HAA
HAB
HAC
HAK
HAN
HAR
HAU
HAZ
HEA
HED
HEL
HEP
HES
HIL
HIN
HLE
HOEH
HOF
HOL
HOM
HOR
HRI
HRV
HUL
HUR
HUS
HYS
HYT
Heliothis
IKE
IMM
Illumina
JAC
JAI
JEN
JI
JOH
JOR
JOU
KAE
KAM
KAN
KAR
KAT
KAW
KEM
KER
KEV
KHA
KLE
KNA
KOE
KOEN
KOG
KOL
KON
KOP
KOS
KOU
KOZ
KRI
KRO
KRU
KRUE
KUB
KUC
KUD
KUG
KUM
KUR
LAL
LAM
LAR
LAU
LAZ
LBNL
LEA
LEM
LER
LI
LIA
LIN
LIU
LOEW
LOM
LOR
LScSA
LU
LUO
LUS
Leptosira
MAA
MAL
MCC
MCL
MCM
MEH
MER
MEY
MIC
MIN
MIPSPlantsDB
MOC
MOE
MOH
MOL
MOR
MUL
MYE
Macronuclear
Maize
MicroRNAs
Mu
Myotis
NAI
NAO
NAR
NEL
NIC
NOU
NOV
NUR
NUS
NYG
Neochloris
OHL
OKA
OSS
OTI
OTT
PAU
PAV
PEC
PEE
PEL
PFE
PLE
PLEXdb
POB
POM
POU
PRI
Piwik
PriMUX
ProbeMatch
QPALMA
RAD
RAH
REE
REH
REI
REN
RIN
RIS
RIV
RNA
RNAi
RNAseq
ROS
RT
RefSeq
Rnnotator
SAF
SAK
SAR
SCHAA
SCHAEF
SCHAR
SCHAT
SCHEL
SCHIJ
SCHIL
SCHLE
SCHLU
SCHLUE
SCHMU
SCHNE
SCHOE
SCHOF
SCHOL
SCHOO
SCHRO
SCHUL
SCHWA
SCHWE
SCO
SCZ
SEG
SEI
SEK
SEV
SHA
SHI
SHU
SIE
SIM
SIMAP
SLE
SLO
SMA
SMI
SMY
SNY
SOE
SOU
SPA
SPI
STE
STEI
STEU
STO
STR
STU
SU
SUL
SZY
Schwab
Seidel
Shewanella
Silva
Slezak
Spirodela
Stefan
Streptococcaceae
TAC
TAF
TAK
TAL
TAY
TEM
THA
THI
TIK
TIR
TIS
TOL
TOR
TOU
TRI
TRO
TRU
TSA
TSU
TT
TUR
Tembe
Tetrahymena
Thellungiella
UDE
UPA
URA
UST
Univ
VAI
VAL
VAS
VAU
VEL
VER
VHA
VIN
VIT
VIV
VLA
VMatchForArabidopsis
VOI
VOS
VOSS
VRA
WAL
WEI
WES
WHA
WHE
WIC
WIE
WIL
WIS
WOD
WOL
WOR
WRE
WU
XU
Xanthomonas
YAN
YU
YUN
ZAJ
ZAL
ZAV
ZEM
ZHA
ZHE
ZHO
ZHU
ZIM
ZIN
aRNH
ab
al
alt
articlerender
artid
biomoby
biopieces
bp
budworm
cand
chromosomal
chromosome
chromosomes
colorlinks
com
contigs
crispr
crosslink
daytrial
de
div
dnavis
doc
enableLinkTracking
endophytes
epichloid
exome
exon
fcgi
fescue
fr
genmome
genome
genomes
genomethreader
getTracker
goltsman
gov
gsf
href
ht
https
idsite
indels
indica
informatik
interspaced
isotigs
javascript
jgi
js
li
linkcolor
llnl
lscsa
ltr
lucifugus
mailto
maize
meliloti
mer
mers
metagenome
metagenomes
miRNAs
microalgae
mips
mircoRNA
mitochondrial
ncRNAs
nigrifrons
nih
nl
noscript
novo
oleoabundans
oneidensis
oryzae
parvula
pesticidal
pigeonpea
piwik
piwikTracker
pkBaseURL
plastid
polyrhiza
preprocess
prj
probeBase
proteome
psud
pubmedcentral
pullulans
retroviruses
rnafolding
seq
siRNA
simap
sp
str
subfamilies
terrestris
tex
thermophila
tigr
trackPageView
transcriptional
transcriptome
trialbox
tue
tuebingen
ul
unescape
uni
var
virescens
weigelworld
wiki
wmd
zenlicensemanager
src/doc/WWW/Dataflowfig.tex deleted 100644 → 0
View file @ d5473510
\documentclass[11pt]{article}
\usepackage{a4wide}
\pagestyle{empty}
\begin{document}
\input{Dataflow.inc}
\noindent The dataflow in \emph{Vmatch}.
The programs
are shown in ellipses. The inputs are the database
and the query sequences and the alphabet transformation,
represented by rectangles. At the center of all
computations the persistent index is shown. All other
rectangles represent the different kinds of output.
\begin{center}
\centerline{\box\graph}
\end{center}
\end{document}
src/doc/WWW/Makefile deleted 100644 → 0
View file @ d5473510
vmwebfiles=Dataflowfig.pdf\
AboKurOhl2004.pdf\
AboKurOhl2002.pdf\
BreKurWal2002.pdf\
ChoSchleKurGie2004.pdf\
FitGarKucKurMyeOttSleVitZemMcc2002.pdf\
KurChoOhlSchleStoGie2001.pdf\
HoehKurOhl2002.pdf\
GraeStrKurSte2001.pdf\
BecStroHomGieKur2004.pdf\
KrueSczKurGie2004.pdf\
virtman.pdf
PAPERS=${WORK}/archive-etc/own-papers
SERVER=vmatchserver
WWWBASEDIR=/var/www/html
all:vmweb.pdf vmweb.tgz
vmweb.pdf:vmweb.tex introduction.inc
latexmk vmweb
introduction.inc:../virtman.tex introexclude
extractpart.pl introduction ../virtman.tex |\
grep -v -f introexclude |\
sed -e 's/\\subsection\*{The parts/\\section*{The parts/' | \
perl -pe 's/\\cite{ABO:KUR:OHL:2004}\.\%\%second/(Abouelhoda, Kurtz, Ohlebusch 2004)./' | \
perl -pe 's/\\cite{(.*)}[\.,]?/\n\\bibentry{\1}\n/' > $@
Dataflow.inc:../Dataflow.pic
pic -t ../Dataflow.pic > $@
index.html:vmweb.tex vmweb.pdf introduction.inc replace-header.rb replace-par.rb
htlatex vmweb.tex "xhtml, charset=utf-8" " -cunihtf -utf8"
cat vmweb.html | replace-header.rb | \
replace-par.rb | \
sed -e 's/CONTENT=/content=/' \
-e 's/ALT=/alt=/' > $@
validate:index.html xhtml-lat1.ent xhtml-symbol.ent xhtml-special.ent xhtml1-transitional.dtd
cat index.html | sed -e 's/\"http:\/\/www.w3.org\/TR\/xhtml1\/DTD\//\"/' > .tmp.html
xmllint --valid --noout .tmp.html
rm -f .tmp.html
# also run validation on https://validator.w3.org/
Dataflowfig.dvi:Dataflowfig.tex Dataflow.inc
latex Dataflowfig.tex
Dataflowfig.pdf:Dataflowfig.dvi
dvipdf $<
vmweb.tgz:matchgraph.gif ${vmwebfiles} index.html vmweb.pdf
tar -cvzf $@ matchgraph.gif ${vmwebfiles} index.html vmweb.pdf
virtman.pdf:
cp ../virtman.pdf .
AboKurOhl2004.pdf:
cp ${PAPERS}/$@ .
AboKurOhl2002.pdf:
cp ${PAPERS}/$@ .
BreKurWal2002.pdf:
cp ${PAPERS}/$@ .
ChoSchleKurGie2004.pdf:
cp ${PAPERS}/$@ .
FitGarKucKurMyeOttSleVitZemMcc2002.pdf:
cp ${PAPERS}/$@ .
KurChoOhlSchleStoGie2001.pdf:
cp ${PAPERS}/$@ .
HoehKurOhl2002.pdf:
cp ${PAPERS}/$@ .
GraeStrKurSte2001.pdf:
cp ${PAPERS}/$@ .
KrueSczKurGie2004.pdf:
cp ${PAPERS}/$@ .
BecStroHomGieKur2004.pdf:
cp ${PAPERS}/$@ .
installwww:
rsync -rv index.html vmweb.css download.html virtman.pdf vmweb.pdf matchgraph.gif distributions $(SERVER):$(WWWBASEDIR)
clean:
rm -f *.toc *.ilg *.out *.idx *.ind *.dvi *.ps *.log *.aux
rm -f *.bbl *.blg
rm -f vmweb.4ct vmweb.xref vmweb.tmp vmweb.lg vmweb.idv vmweb.html vmweb.4tc vmweb.fls vmweb.fdb_latexmk
rm -f comment.cut introduction.inc
rm -f Dataflow.inc
rm -f ${vmwebfiles}
src/doc/WWW/PUSH-cmd.txt deleted 100644 → 0
View file @ d5473510
git push kurtz@genometools.org:/home/kurtz/lscsa/vstree.git sk
src/doc/WWW/download.html deleted 100644 → 0
View file @ d5473510
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<title>Download Vmatch</title>
<link rel="stylesheet" type="text/css" href="vmweb.css">
</head>
<body>
<h1>Download <i>Vmatch</i></h1>
<p>
By downloading Vmatch you agree to the following:
</p>
<p>
<code>
Vmatch is provided on an <strong>AS IS</strong> basis. The developers do not warrant its validity
of performance, efficiency, or suitability, nor do they warrant that Vmatch is
free from errors. All warranties, including without limitation, any warranty or
merchantability or fitness for a particular purpose, are hereby excluded.
</code>
</p>
<h2>Linux</h2>
<a href="distributions/vmatch-2.3.0-Linux_x86_64-64bit.tar.gz">vmatch-2.3.0-Linux_x86_64-64bit.tar.gz</a> (2017-06-12)<br/>
<a href="distributions/vmatch-2.3.0-Linux_i386-32bit.tar.gz">vmatch-2.3.0-Linux_i386-32bit.tar.gz</a> (2017-06-12)<br/>
<h2>Mac OS</h2>
<a href="distributions/vmatch-2.3.0-Darwin_i386-64bit.tar.gz">vmatch-2.3.0-Darwin_i386-64bit.tar.gz</a> (2017-06-12)<br/>
<a href="distributions/vmatch-2.3.0-Darwin_i386-32bit.tar.gz">vmatch-2.3.0-Darwin_i386-32bit.tar.gz</a> (2017-06-12)<br/>
<h2>Windows</h2>
<a href="distributions/vmatch-2.3.0-Windows_i686-64bit.zip">vmatch-2.3.0-Windows_i686-64bit.zip</a> (2017-06-12)<br/>
<a href="distributions/vmatch-2.3.0-Windows_i686-32bit.zip">vmatch-2.3.0-Windows_i686-32bit.zip</a> (2017-06-12)<br/>
<!-- Piwik -->
<script type="text/javascript">
var pkBaseURL = "https://zenlicensemanager.com/piwik/";
document.write(unescape("%3Cscript src='" + pkBaseURL + "piwik.js' type='text/javascript'%3E%3C/script%3E"));
</script><script type="text/javascript">
try {
var piwikTracker = Piwik.getTracker(pkBaseURL + "piwik.php", 3);
piwikTracker.trackPageView();
piwikTracker.enableLinkTracking();
} catch( err ) {}
</script><noscript><p><img src="https://zenlicensemanager.com/piwik/piwik.php?idsite=3" style="border:0" alt="" /></p></noscript>
<!-- End Piwik Tracking Tag -->
</body>
</html>
src/doc/WWW/extractpart.pl deleted 100755 → 0
View file @ d5473510
#!/usr/bin/env perl
# select a list of options from a documentation
use strict;
use warnings;
my $numofargs = scalar @ARGV;
if($numofargs le 1)
{
print STDERR "Usage: $0 <tags to be selected> <filename>\n";
exit 1;
}
my(%tagtab) = ();
my $filename = $ARGV[$numofargs-1];
for(my $i=0; $i<$numofargs-1; $i++)
{
my $key = $ARGV[$i];
$tagtab{$key} = 1;
}
# Get file data
my @filecontents = get_file_data($filename);
my $currenttagtext = '';
my $currenttag = '';
my $intag = 0; # inside an option (which can be multiline)
for my $line (@filecontents)
{
if($intag)
{
if($line =~ /^\%\%\%END{([a-z]+)/)
{
if($1 ne $currenttag)
{
print STDERR "$0: BEGIN{$currenttag} ends with END{$1}\n";
exit 1;
}
print STDERR "\%\%\%matched END with \"$currenttag\"\n";
$intag = 0;
print $currenttagtext, "\n";
$currenttagtext = '';
$currenttag = '';
} else
{
$currenttagtext .= $line;
}
} else
{
if($line =~ /^\%\%\%BEGIN{([a-z]+)}/)
{
print STDERR "\%\%\%matched BEGIN with \"$1\"\n";
if(exists $tagtab{$1})
{
$intag = 1;
$currenttag = $1;
}
}
}
}
exit 0;
# check if the number of arguments is as expected
# get last argument
sub get_file_data
{
my($filename) = @_;
unless(open(GET_FILE_DATA, $filename))
{
print STDERR "$0: Cannot open file $filename\n";
exit 1;
}
my @filedata = <GET_FILE_DATA>;
close GET_FILE_DATA;
return @filedata;
}
src/doc/WWW/index.html deleted 100644 → 0
View file @ d5473510
This diff is collapsed.
src/doc/WWW/introexclude deleted 100644 → 0
View file @ d5473510
\\begin{AboutVmatch}
\\end{AboutVmatch}
src/doc/WWW/remove-html.rb deleted 100755 → 0
View file @ d5473510
#!/usr/bin/env ruby
def remove_html_tags(s)
re = /<("[^"]*"|'[^']*'|[^'">])*>/
return s.gsub(re, "")
end
ARGV.each do |filename|
file = File.open(filename, "rb")
contents = file.read
print remove_html_tags(contents)
end
src/doc/WWW/replace-header.rb deleted 100755 → 0
View file @ d5473510
#!/usr/bin/env ruby
STDIN.each_line do |line|
if line.match(/<meta name=\"src\" content="vmweb.tex"/)
print "#{line}"
puts <<'HEADER'
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"/>
<meta name="description" CONTENT="The Vmatch large scale sequence analysis
software is a versatile software tool for efficiently solving large scale sequence matching tasks."/>
<meta name="keywords" CONTENT="sequence analysis, sequence mapping, BLAST, bioinformatics, computational biology"/>
<meta http-equiv="Content-Style-Type" content="text/css"/>
HEADER
elsif line.match(/class=\"titleHead|author|date\"/)
print line.gsub(/class=/,"align=\"center\" class=").gsub(/h2/,"h1")
elsif line.match(/\/h2/)
print line.gsub(/\/h2/,"\/h1")
else
print line
end
end
src/doc/WWW/replace-par.rb deleted 100755 → 0
View file @ d5473510
#!/usr/bin/env ruby
puts STDIN.read.gsub!(/<p class=\"noindent\" > <!--delete paragraph-->(.*)\n?<\/p\>/,"\\1\n")
src/doc/WWW/vmweb.css deleted 100644 → 0
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body {
font-family: Verdana, Geneva, Arial, sans-serif;
}
h1, h2, h3, h4, h5, h6 {
color:black;
}
#w3checklogo {
float: right;
clear: right;
}
#downloadbox {
float: right;
clear: right;
width: 280px;
padding-right: 20px;
}
#downloadbox li {
list-style-type: none;
}
#downloadbox li a {
list-style-type: none;
border : 1px solid black;
display: block;
padding: 4px 15px 4px 15px;
text-decoration: none;
}
#downloadbox li a:link {
color: black;
background: rgb(90%, 90%, 20%);
}
#downloadbox li a:visited {
color: gray;
background: rgb(90%, 90%, 20%);
}
#downloadbox li a:hover {
color: white;
background: rgb(60%, 60%, 90%);
}
#footer {
font-size: 66%;
text-align: center;
margin-top: 20px;
background-color: #DDDDDD;
}
src/doc/WWW/vmweb.tex deleted 100644 → 0
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src/doc/WWW/xhtml-lat1.ent deleted 100644 → 0
View file @ d5473510
<!-- Portions (C) International Organization for Standardization 1986
Permission to copy in any form is granted for use with
conforming SGML systems and applications as defined in
ISO 8879, provided this notice is included in all copies.
-->
<!-- Character entity set. Typical invocation:
<!ENTITY % HTMLlat1 PUBLIC
"-//W3C//ENTITIES Latin 1 for XHTML//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml-lat1.ent">
%HTMLlat1;
-->
<!ENTITY nbsp "&#160;"> <!-- no-break space = non-breaking space,
U+00A0 ISOnum -->
<!ENTITY iexcl "&#161;"> <!-- inverted exclamation mark, U+00A1 ISOnum -->
<!ENTITY cent "&#162;"> <!-- cent sign, U+00A2 ISOnum -->
<!ENTITY pound "&#163;"> <!-- pound sign, U+00A3 ISOnum -->
<!ENTITY curren "&#164;"> <!-- currency sign, U+00A4 ISOnum -->
<!ENTITY yen "&#165;"> <!-- yen sign = yuan sign, U+00A5 ISOnum -->
<!ENTITY brvbar "&#166;"> <!-- broken bar = broken vertical bar,
U+00A6 ISOnum -->
<!ENTITY sect "&#167;"> <!-- section sign, U+00A7 ISOnum -->
<!ENTITY uml "&#168;"> <!-- diaeresis = spacing diaeresis,
U+00A8 ISOdia -->
<!ENTITY copy "&#169;"> <!-- copyright sign, U+00A9 ISOnum -->
<!ENTITY ordf "&#170;"> <!-- feminine ordinal indicator, U+00AA ISOnum -->
<!ENTITY laquo "&#171;"> <!-- left-pointing double angle quotation mark
= left pointing guillemet, U+00AB ISOnum -->
<!ENTITY not "&#172;"> <!-- not sign = angled dash,
U+00AC ISOnum -->
<!ENTITY shy "&#173;"> <!-- soft hyphen = discretionary hyphen,
U+00AD ISOnum -->
<!ENTITY reg "&#174;"> <!-- registered sign = registered trade mark sign,
U+00AE ISOnum -->
<!ENTITY macr "&#175;"> <!-- macron = spacing macron = overline
= APL overbar, U+00AF ISOdia -->
<!ENTITY deg "&#176;"> <!-- degree sign, U+00B0 ISOnum -->
<!ENTITY plusmn "&#177;"> <!-- plus-minus sign = plus-or-minus sign,
U+00B1 ISOnum -->
<!ENTITY sup2 "&#178;"> <!-- superscript two = superscript digit two
= squared, U+00B2 ISOnum -->
<!ENTITY sup3 "&#179;"> <!-- superscript three = superscript digit three
= cubed, U+00B3 ISOnum -->
<!ENTITY acute "&#180;"> <!-- acute accent = spacing acute,
U+00B4 ISOdia -->
<!ENTITY micro "&#181;"> <!-- micro sign, U+00B5 ISOnum -->
<!ENTITY para "&#182;"> <!-- pilcrow sign = paragraph sign,
U+00B6 ISOnum -->
<!ENTITY middot "&#183;"> <!-- middle dot = Georgian comma
= Greek middle dot, U+00B7 ISOnum -->
<!ENTITY cedil "&#184;"> <!-- cedilla = spacing cedilla, U+00B8 ISOdia -->
<!ENTITY sup1 "&#185;"> <!-- superscript one = superscript digit one,
U+00B9 ISOnum -->
<!ENTITY ordm "&#186;"> <!-- masculine ordinal indicator,
U+00BA ISOnum -->
<!ENTITY raquo "&#187;"> <!-- right-pointing double angle quotation mark
= right pointing guillemet, U+00BB ISOnum -->
<!ENTITY frac14 "&#188;"> <!-- vulgar fraction one quarter
= fraction one quarter, U+00BC ISOnum -->
<!ENTITY frac12 "&#189;"> <!-- vulgar fraction one half
= fraction one half, U+00BD ISOnum -->
<!ENTITY frac34 "&#190;"> <!-- vulgar fraction three quarters
= fraction three quarters, U+00BE ISOnum -->
<!ENTITY iquest "&#191;"> <!-- inverted question mark
= turned question mark, U+00BF ISOnum -->
<!ENTITY Agrave "&#192;"> <!-- latin capital letter A with grave
= latin capital letter A grave,
U+00C0 ISOlat1 -->
<!ENTITY Aacute "&#193;"> <!-- latin capital letter A with acute,
U+00C1 ISOlat1 -->
<!ENTITY Acirc "&#194;"> <!-- latin capital letter A with circumflex,
U+00C2 ISOlat1 -->
<!ENTITY Atilde "&#195;"> <!-- latin capital letter A with tilde,
U+00C3 ISOlat1 -->
<!ENTITY Auml "&#196;"> <!-- latin capital letter A with diaeresis,
U+00C4 ISOlat1 -->
<!ENTITY Aring "&#197;"> <!-- latin capital letter A with ring above
= latin capital letter A ring,
U+00C5 ISOlat1 -->
<!ENTITY AElig "&#198;"> <!-- latin capital letter AE
= latin capital ligature AE,
U+00C6 ISOlat1 -->
<!ENTITY Ccedil "&#199;"> <!-- latin capital letter C with cedilla,
U+00C7 ISOlat1 -->
<!ENTITY Egrave "&#200;"> <!-- latin capital letter E with grave,
U+00C8 ISOlat1 -->
<!ENTITY Eacute "&#201;"> <!-- latin capital letter E with acute,
U+00C9 ISOlat1 -->
<!ENTITY Ecirc "&#202;"> <!-- latin capital letter E with circumflex,
U+00CA ISOlat1 -->
<!ENTITY Euml "&#203;"> <!-- latin capital letter E with diaeresis,
U+00CB ISOlat1 -->
<!ENTITY Igrave "&#204;"> <!-- latin capital letter I with grave,
U+00CC ISOlat1 -->
<!ENTITY Iacute "&#205;"> <!-- latin capital letter I with acute,
U+00CD ISOlat1 -->
<!ENTITY Icirc "&#206;"> <!-- latin capital letter I with circumflex,
U+00CE ISOlat1 -->
<!ENTITY Iuml "&#207;"> <!-- latin capital letter I with diaeresis,
U+00CF ISOlat1 -->
<!ENTITY ETH "&#208;"> <!-- latin capital letter ETH, U+00D0 ISOlat1 -->
<!ENTITY Ntilde "&#209;"> <!-- latin capital letter N with tilde,
U+00D1 ISOlat1 -->
<!ENTITY Ograve "&#210;"> <!-- latin capital letter O with grave,
U+00D2 ISOlat1 -->
<!ENTITY Oacute "&#211;"> <!-- latin capital letter O with acute,
U+00D3 ISOlat1 -->
<!ENTITY Ocirc "&#212;"> <!-- latin capital letter O with circumflex,
U+00D4 ISOlat1 -->
<!ENTITY Otilde "&#213;"> <!-- latin capital letter O with tilde,
U+00D5 ISOlat1 -->
<!ENTITY Ouml "&#214;"> <!-- latin capital letter O with diaeresis,
U+00D6 ISOlat1 -->
<!ENTITY times "&#215;"> <!-- multiplication sign, U+00D7 ISOnum -->
<!ENTITY Oslash "&#216;"> <!-- latin capital letter O with stroke
= latin capital letter O slash,
U+00D8 ISOlat1 -->
<!ENTITY Ugrave "&#217;"> <!-- latin capital letter U with grave,
U+00D9 ISOlat1 -->
<!ENTITY Uacute "&#218;"> <!-- latin capital letter U with acute,
U+00DA ISOlat1 -->
<!ENTITY Ucirc "&#219;"> <!-- latin capital letter U with circumflex,
U+00DB ISOlat1 -->
<!ENTITY Uuml "&#220;"> <!-- latin capital letter U with diaeresis,
U+00DC ISOlat1 -->
<!ENTITY Yacute "&#221;"> <!-- latin capital letter Y with acute,
U+00DD ISOlat1 -->
<!ENTITY THORN "&#222;"> <!-- latin capital letter THORN,
U+00DE ISOlat1 -->
<!ENTITY szlig "&#223;"> <!-- latin small letter sharp s = ess-zed,
U+00DF ISOlat1 -->
<!ENTITY agrave "&#224;"> <!-- latin small letter a with grave
= latin small letter a grave,
U+00E0 ISOlat1 -->
<!ENTITY aacute "&#225;"> <!-- latin small letter a with acute,
U+00E1 ISOlat1 -->
<!ENTITY acirc "&#226;"> <!-- latin small letter a with circumflex,
U+00E2 ISOlat1 -->
<!ENTITY atilde "&#227;"> <!-- latin small letter a with tilde,
U+00E3 ISOlat1 -->
<!ENTITY auml "&#228;"> <!-- latin small letter a with diaeresis,
U+00E4 ISOlat1 -->
<!ENTITY aring "&#229;"> <!-- latin small letter a with ring above
= latin small letter a ring,
U+00E5 ISOlat1 -->
<!ENTITY aelig "&#230;"> <!-- latin small letter ae
= latin small ligature ae, U+00E6 ISOlat1 -->
<!ENTITY ccedil "&#231;"> <!-- latin small letter c with cedilla,
U+00E7 ISOlat1 -->
<!ENTITY egrave "&#232;"> <!-- latin small letter e with grave,
U+00E8 ISOlat1 -->
<!ENTITY eacute "&#233;"> <!-- latin small letter e with acute,
U+00E9 ISOlat1 -->
<!ENTITY ecirc "&#234;"> <!-- latin small letter e with circumflex,
U+00EA ISOlat1 -->
<!ENTITY euml "&#235;"> <!-- latin small letter e with diaeresis,
U+00EB ISOlat1 -->
<!ENTITY igrave "&#236;"> <!-- latin small letter i with grave,
U+00EC ISOlat1 -->
<!ENTITY iacute "&#237;"> <!-- latin small letter i with acute,
U+00ED ISOlat1 -->
<!ENTITY icirc "&#238;"> <!-- latin small letter i with circumflex,
U+00EE ISOlat1 -->
<!ENTITY iuml "&#239;"> <!-- latin small letter i with diaeresis,
U+00EF ISOlat1 -->
<!ENTITY eth "&#240;"> <!-- latin small letter eth, U+00F0 ISOlat1 -->
<!ENTITY ntilde "&#241;"> <!-- latin small letter n with tilde,
U+00F1 ISOlat1 -->
<!ENTITY ograve "&#242;"> <!-- latin small letter o with grave,
U+00F2 ISOlat1 -->
<!ENTITY oacute "&#243;"> <!-- latin small letter o with acute,
U+00F3 ISOlat1 -->
<!ENTITY ocirc "&#244;"> <!-- latin small letter o with circumflex,
U+00F4 ISOlat1 -->
<!ENTITY otilde "&#245;"> <!-- latin small letter o with tilde,
U+00F5 ISOlat1 -->
<!ENTITY ouml "&#246;"> <!-- latin small letter o with diaeresis,
U+00F6 ISOlat1 -->
<!ENTITY divide "&#247;"> <!-- division sign, U+00F7 ISOnum -->
<!ENTITY oslash "&#248;"> <!-- latin small letter o with stroke,
= latin small letter o slash,
U+00F8 ISOlat1 -->
<!ENTITY ugrave "&#249;"> <!-- latin small letter u with grave,
U+00F9 ISOlat1 -->
<!ENTITY uacute "&#250;"> <!-- latin small letter u with acute,
U+00FA ISOlat1 -->
<!ENTITY ucirc "&#251;"> <!-- latin small letter u with circumflex,
U+00FB ISOlat1 -->
<!ENTITY uuml "&#252;"> <!-- latin small letter u with diaeresis,
U+00FC ISOlat1 -->
<!ENTITY yacute "&#253;"> <!-- latin small letter y with acute,
U+00FD ISOlat1 -->
<!ENTITY thorn "&#254;"> <!-- latin small letter thorn,
U+00FE ISOlat1 -->
<!ENTITY yuml "&#255;"> <!-- latin small letter y with diaeresis,
U+00FF ISOlat1 -->