debian/changelog

-vmatch (2.3.0+dfsg-1) unstable; urgency=medium
+vmatch (2.3.0+git20200101.0.b1bd228+dfsg-1) unstable; urgency=medium
 
-  * Initial release (Closes: #)
+  * Initial release (Closes: #947954)
 
- -- Sascha Steinbiss <satta@debian.org>  Mon, 30 Dec 2019 14:49:09 +0100
+ -- Sascha Steinbiss <satta@debian.org>  Fri, 03 Jan 2020 10:10:26 +0100

src/Mkvtree/remainsort.c

@@ -195,7 +195,7 @@ void addunsortedrange(Rmnsufinfo *rmnsufinfo,
 {
   if(left == right)
   {
-    printf("allready sorted(%lu,%lu,%lu)\n",
+    printf("already sorted(%lu,%lu,%lu)\n",
             (Showuint) depth,(Showuint) (left-rmnsufinfo->sortedsuffixes),
                   (Showuint) (right-rmnsufinfo->sortedsuffixes));
     rmnsufinfo->countovermaxdepthsingle++;

src/Vmatch/allmclust.c

@@ -56,7 +56,7 @@ Sint genericmatchclustering(Matchclustercallinfo *matchclustercallinfo,
         }
       } else
       {
-        ERROR0("unkown matchclustertype");
+        ERROR0("unknown matchclustertype");
         return (Sint) -3;
       }
     }

src/Vmatch/chncallparse.c

@@ -270,7 +270,7 @@ Sint parsechain2dim(BOOL fromvmatch,
                            "each followed by a number specifies the minimum\n"
                            "length and the maximum error rate of thread\n"
                            "1 refers to match instance in indexed sequence\n"
-                           "2 refers to matchin instance in query");
+                           "2 refers to matching instance in query");
   ADDOPTION(OPTSILENT,"-silent","do not output the chains\n"
                                 "and only report "
                                 "their lengths and scores");

src/kurtz-basic/multiseq-adv.c

@@ -1471,7 +1471,7 @@ void echothedescription(FILE *outfp,Showdescinfo *showdesc,Multiseq *multiseq,
 
   if(!showdesc->defined)
   {
-    fprintf(stderr,"programm error: format specification for "
+    fprintf(stderr,"programming error: format specification for "
                    "description is undefined\n");
     exit(EXIT_FAILURE);
   }
@@ -1879,7 +1879,7 @@ static Sint parsemultiseqprojectfilefromfileptr(Multiseq *multiseq,
   }
   if(fscanf(fp,"littleendian=%ld\n",&readint1) != 1)
   {
-    ERROR2("%s.%s contains illegal line defining the endianess",
+    ERROR2("%s.%s contains illegal line defining the endianness",
                indexname,PROJECTFILESUFFIX);
     return (Sint) -8;
   }

src/kurtz-basic/procopt.c

@@ -499,7 +499,7 @@ Sint checkdoubleexclude(Uint numofopts,
       DEBUG2(2,"Exclude %s %s\n",opt[indi].optname,opt[indj].optname);
       if(excludepairs[indi*numofopts+indj])
       {
-        ERROR2("option %s and option %s already specfied as excluded",
+        ERROR2("option %s and option %s already specified as excluded",
                opt[indi].optname,opt[indj].optname);
         return (Sint) -1;
       }

src/kurtz/programversion.c

@@ -11,15 +11,12 @@ static void showgenericprogramversion(FILE *fp,
                                       char *cflags)
 {
   fprintf(fp, "%s (Vmatch) %s (%s)\n", program, version, compiledate);
-  fprintf(fp, "All rights reserved. Do not distribute.\n\n");
   fprintf(fp, "libvmatch:\n");
   fprintf(fp, "Copyright (c) 2000-2016 LScSA-Software GmbH\n\n");
 #ifndef NOLICENSEMANAGER
   fprintf(fp, "libzlm:\n");
   fprintf(fp, "Copyright (c) 2013-2016 Wikena GmbH\n\n");
 #endif
-  fprintf(fp, "LScSA-Software GmbH is the exclusive worldwide distributor of "
-              "Vmatch.\n");
   fprintf(fp, "Email: kurtz@zbh.uni-hamburg.de\n\n");
   fprintf(fp, "Compile flags: %s\n\n", cflags);
   fprintf(fp, "Vmatch is provided on an AS IS basis. The developers do not "