Commit 40a3bf94 authored by Michael Hanke's avatar Michael Hanke

Attempt to collect literature on and around NeuroDebian

parent 8f82031f
@inproceedings{GBC+2010,
title={Nipype: opensource platform for unified and replicable interaction with existing neuroimaging tools},
author={Ghosh, S and Burns, C and Clark, D and Gorgolewski, K and Halchenko, Y and Madison, C and Tungaraza, R and Millman, KJ},
booktitle={16th Annual Meeting of the Organization for Human Brain Mapping},
pages={106},
year={2010}
}
@article{NDR+2011,
title={Lin4Neuro: a customized Linux distribution ready for neuroimaging analysis},
author={Nemoto, Kiyotaka and Dan, Ippeita and Rorden, Christopher and Ohnishi, Takashi and Tsuzuki, Daisuke and Okamoto, Masako and Yamashita, Fumio and Asada, Takashi},
journal={BMC medical imaging},
volume={11},
number={1},
pages={3},
year={2011},
publisher={BioMed Central Ltd}
}
@article{YIO+2012,
title={Simulation Platform: A cloud-based online simulation environment},
author={Yamazaki, Tadashi and Ikeno, Hidetoshi and Okumura, Yoshihiro and Satoh, Shunji and Kamiyama, Yoshimi and Hirata, Yutaka and Inagaki, Keiichiro and Ishihara, Akito and Kannon, Takayuki and Usui, Shiro},
journal={Neural networks},
volume={24},
number={7},
pages={693--698},
year={2011},
publisher={Elsevier}
}
@article{GDL+2011,
title={The connectome viewer toolkit: an open source framework to manage, analyze, and visualize connectomes},
author={Gerhard, Stephan and Daducci, Alessandro and Lemkaddem, Alia and Meuli, Reto and Thiran, Jean-Philippe and Hagmann, Patric},
journal={Frontiers in neuroinformatics},
volume={5},
year={2011},
publisher={Frontiers Media SA}
}
@article{Agu2012,
title={FIASCO, VoxBo, and MEDx: Behind the code},
author={Aguirre, Geoffrey K},
journal={NeuroImage},
volume={62},
number={2},
pages={765--767},
year={2012},
publisher={Elsevier}
}
@article{MST2012,
author={Mathôt, S. and Schreij, D. and Theeuwes, J.},
year={2012},
title={OpenSesame: An open-source, graphical experiment builder for the social sciences},
journal={Behavior Research Methods},
volume={44},
pages={314--324},
doi={10.3758/s13428-011-0168-7}
}
@inproceedings{SLZ+2011,
title={A cloud-based data-sharing and analysis cyberinfrastructure for neuroinformatics},
author={Stoner, R and Larson, S and Zaslavsky, I and Hill, S and Ellisman, M and Courchesne, E},
booktitle={Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics. doi: 10.3389/conf. fninf},
volume={34},
year={2011}
}
@article{SMT+2011,
title={Integrative visualization of temporally varying medical image patterns},
author={Soh, Jung and Mei Xiao, Thao Do and Meruvia-Pastor, Oscar and Sensen, Christoph W},
journal={Journal of integrative bioinformatics},
volume={8},
number={2},
pages={161},
year={2011}
}
@inproceedings{MDT+2012,
title={Mouse neuroimaging phenotyping in the cloud},
author={Minervini, Massimo and Damiano, Mario and Tucci, Valter and Bifone, Angelo and Gozzi, Alessandro and Tsaftaris, Sotirios A},
booktitle={Image Processing Theory, Tools and Applications (IPTA), 2012 3rd International Conference on},
pages={55--60},
year={2012},
organization={IEEE}
}
@inproceedings{GDS+2012,
title={A hierachical configuration system for a massively parallel neural hardware platform},
author={Galluppi, Francesco and Davies, Sergio and Rast, Alexander and Sharp, Thomas and Plana, Luis A and Furber, Steve},
booktitle={Proceedings of the 9th conference on Computing Frontiers},
pages={183--192},
year={2012},
organization={ACM}
}
@article{CCT+2012,
title={Meta-analytic clustering of the insular cortex Characterizing the meta-analytic connectivity of the insula when involved in active tasks},
author={Cauda, Franco and Costa, Tommaso and Torta, Diana ME and Sacco, Katiuscia and D'Agata, Federico and Duca, Sergio and Geminiani, Giuliano and Fox, Peter T and Vercelli, Alessandro},
journal={Neuroimage},
year={2012},
publisher={Elsevier}
}
@article{GEF+2012,
title={Oral contraceptive use changes brain activity and mood in women with previous negative affect on the pill—A double-blinded, placebo-controlled randomized trial of a levonorgestrel-containing combined oral contraceptive},
author={Gingnell, Malin and Engman, Jonas and Frick, Andreas and Moby, Lena and Wikstr{\"o}m, Johan and Fredrikson, Mats and Sundstr{\"o}m-Poromaa, Inger},
journal={Psychoneuroendocrinology},
year={2012},
publisher={Elsevier}
}
@article{GMB+2012,
title={Menstrual cycle effects on amygdala reactivity to emotional stimulation in premenstrual dysphoric disorder},
author={Gingnell, Malin and Morell, Arvid and Bannbers, Elin and Wikstr{\"o}m, Johan and Poromaa, Inger Sundstr{\"o}m},
journal={Hormones and behavior},
year={2012},
publisher={Elsevier}
}
@article{Mil2012,
title = "Open Neuroscience Solutions for the Connectome-wide Association Era",
journal = "Neuron",
volume = "73",
number = "2",
pages = "214--218",
year = "2012",
doi = "10.1016/j.neuron.2011.11.004",
url = "http://www.sciencedirect.com/science/article/pii/S0896627311010038",
author = "Michael Peter Milham"
}
@article{Vis2012,
author={Vişan, Ana-Maria},
title={Temporal meta-programming: treating time as a spatial dimension},
year={2012},
journal={Computer Science Dissertations},
volume={27},
url={http://hdl.handle.net/2047/d20002935}
}
.. -*- mode: rst; fill-column: 78; indent-tabs-mode: nil -*-
.. vi: set ft=rst sts=4 ts=4 sw=4 et tw=79:
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#
# See COPYING file distributed along with the NeuroDebian package for the
# copyright and license terms.
#
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.. index:: Who is using it?, Publications
.. _chap_whoisusingit:
****************
Who Is Using It?
****************
.. only:: html
If you are using NeuroDebian or have published a study employing it, please
leave a comment at the bottom of this page, if you want to be listed here as
well.
Tools and systems built atop NeuroDebian
========================================
* ref:`Nemoto et al., BMC Medical Imaging (2011) <NDR+2011>`: Lin4Neuro: a
customized Linux distribution ready for neuroimaging analysis.
* ref:`Stoner et al., Frontiers in Neuroinformatics (2012) <SLZ+2011>`:
A cloud-based data-sharing and analysis cyberinfrastructure for
neuroinformatics.
Articles referring to NeuroDebian
=================================
* :ref:`Yamazaki et al., NeuralNetworks (2011) <YIO+2012>`: Simulation platform:
A cloud-based online simulation environment.
* ref:`Aguirre, NeuroImage (2012) <Agu2012>`: FIASCO, VoxBo, and MEDx: Behind
the code.
* ref:`Mathôt et al., Behavioral Research Methods (2012) <MST2012>`: OpenSesame:
An open-source, graphical experiment builder for the social sciences.
* ref:`Minervini et al., Image Processing Theory, Tools and Applications (2012)
<MDT+2012>`: Mouse neuroimaging phenotyping in the cloud.
* ref:`Galluppi et al., Computing Frontiers (2012) <GDS+2012>`: A hierachical
configuration system for a massively parallel neural hardware platform.
* ref:`Cauda et al., NeuroImage (2012) <CCT+2012>`: Meta-analytic clustering of
the insular cortex Characterizing the meta-analytic connectivity of the insula
when involved in active tasks.
* ref:`Gingnell et al., Psychoneuroendocrinology (2012) <GEF+2012>`: Oral
contraceptive use changes brain activity and mood in women with previous
negative affect on the pill—A double-blinded, placebo-controlled randomized
trial of a levonorgestrel-containing combined oral contraceptive.
* ref:`Gingnell et al., Hormones and Behavior (2012) <GMB+2012>`: Menstrual
cycle effects on amygdala reactivity to emotional stimulation in premenstrual
dysphoric disorder.
* ref:`Milham, Neuron, (2012) <Mil2012>`: Open Neuroscience Solutions for the
Connectome-wide Association Era.
* ref:`Visan, Computer Science Dissertations (2012) <Vis2012>`: Temporal
meta-programming: treating time as a spatial dimension.
* ref:`Gerhard et al., Frontiers in Neuroinformatics (2011) <GDL+2011>`: The
connectome viewer toolkit: an open source framework to manage, analyze, and
visualize connectomes.
* ref:`Soh et al., Journal of Integrative Bioinformatics (2011) <SMT+2011>`:
Integrative visualization of temporally varying medical image patterns.
* ref:`Gosh et al., HBM (2010) <GBC+2010>`: Nipype: opensource platform for
unified and replicable interaction with existing neuroimaging tools.
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