DESCRIPTION 1.42 KB
Newer Older
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
Package: GenomeInfoDb
Title: Utilities for manipulating chromosome and other 'seqname'
        identifiers
Description: Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.
Version: 1.12.2
Encoding: UTF-8
Author: Sonali Arora, Martin Morgan, Marc Carlson, H. Pagès
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation
Depends: R (>= 3.1), methods, BiocGenerics (>= 0.13.8), S4Vectors (>=
        0.9.25), IRanges (>= 1.99.26)
Imports: stats, stats4, utils, RCurl, GenomeInfoDbData
Suggests: GenomicRanges, Rsamtools, GenomicAlignments, BSgenome,
        GenomicFeatures, BSgenome.Scerevisiae.UCSC.sacCer2,
        BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.NCBI.GRCh38,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr
License: Artistic-2.0
Collate: utils.R rankSeqlevels.R assembly-utils.R available.species.R
        fetchExtendedChromInfoFromUCSC.R fetchSequenceInfo.R seqinfo.R
        seqlevelsStyle.R seqlevels-wrappers.R Seqinfo-class.R
        GenomeDescription-class.R mapGenomeBuilds.R zzz.R
VignetteBuilder: knitr
Video: http://youtu.be/wdEjCYSXa7w
NeedsCompilation: no
Packaged: 2017-06-08 23:29:48 UTC; biocbuild