Update to upstream version '3.0.8'
with Debian dir 4e7e7624930de3c9c002f0612ba43e41a6709670

Update to upstream version '3.0.7'
with Debian dir 4bbf7e6f96f3114fe524a3d896d648fb7cc1a486

Update to upstream version '3.0.6'
with Debian dir 4bbf7e6f96f3114fe524a3d896d648fb7cc1a486

Update to upstream version '3.0.6'
with Debian dir 6c961bf8d4c34a3602a344898cd43723a99a8359

By using the -DWITHOUT_MZMLB definition, in GNU/Linux and in Windows,
the library fails to build because #ifndef WITHOUT_MZMLB #endif blocks
do not succesfully isolate the mzMLb code in pwiz/data/msdata/IO.cpp.

While in GNU/Linux the mzMLb feature can be built fine, in Windows, the
mzMLb feature cannot be built because the link step fails with numerous
undefined reference errors, even if the libhdf5_cpp-310.dll library is
found and the nm / objdump commands show that the purportedly missing
symbols are indeed exported. The errors all originate from the link of
the pwiz/data/msdata/mzmlb/Connection_mzMLb.cp file.

So the idea in Windows, is to shunt the mzMLb implementation by:

In CMakeStuff/toolchains/win10-mingw64-toolchain.cmake:

  set(hdf5_LIBRARIES "")
  set(hdf5_INCLUDE_DIRS "")
  add_definitions(-DWITHOUT_MZMLB)

Move pwiz/data/msdata/IO-FRusconi-removed-all-mzmlb-related-code.cpp
to
pwiz/data/msdata/IO.cpp

In src/CMakeLists.txt:

  comment out file
  pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp
  from the list of source files.

With the modifications in place, the library is built on Windows.

When the built library will have been proven to be good at reading
normal mzML files, we'll change pwiz/data/msdata/IO.cpp by using

Implement back the modifications required for MXE and WIN10 compilation of
src/pwiz/utility/misc/Filesystem.cpp. Still builds on GNU-Linux.

Signed-off-by: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>

Signed-off-by: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>

The modifications applied as patch from bin num diff from
Steve Langasek <vorlon@debian.org>  Fri, 02 Feb 2024 01:25:21 +0000.

Signed-off-by: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>

The source update added only one pair of hpp/cpp files for mzMLb format.
For this format, libhdf5 was needed, so new CMake configuration code was needed.
The configuration works fine within Debian Linux.

New Deb package version to fix Bug#1045317: libpwizlite: Fails to build source after successful build.