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Commit 629305fe authored by Andrius Merkys's avatar Andrius Merkys
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New upstream version 0.13.6

parent 92350c75
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......@@ -16,7 +16,7 @@ From Maven
<dependency>
<groupId>com.github.jsonld-java</groupId>
<artifactId>jsonld-java</artifactId>
<version>0.13.4</version>
<version>0.13.5</version>
</dependency>
Code example
......@@ -323,11 +323,11 @@ Here is the basic outline for what your module's pom.xml should look like
<parent>
<groupId>com.github.jsonld-java</groupId>
<artifactId>jsonld-java-parent</artifactId>
<version>0.13.4</version>
<version>0.13.5</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>jsonld-java-{your module}</artifactId>
<version>0.13.4-SNAPSHOT</version>
<version>0.13.5-SNAPSHOT</version>
<name>JSONLD Java :: {your module name}</name>
<description>JSON-LD Java integration module for {RDF Library your module integrates}</description>
<packaging>jar</packaging>
......@@ -449,6 +449,14 @@ Alternatively, we can also host your repository in the jsonld-java organisation
CHANGELOG
=========
### 2023-11-06
* Release 0.13.6
* Bump Jackson-databind version to latest for security update
### 2023-11-03
* Release 0.13.5
* Bump Jackson and Guava versions to latest for security updates
### 2021-12-13
* Release 0.13.4
* Switch test logging from log4j to logback (Patch by @ansell)
......
......@@ -4,7 +4,7 @@
<parent>
<artifactId>jsonld-java-parent</artifactId>
<groupId>com.github.jsonld-java</groupId>
<version>0.13.4</version>
<version>0.13.6</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>jsonld-java</artifactId>
......
{
"@context": [
"https://raw.githubusercontent.com/monarch-initiative/monarch-app/master/conf/monarch-context.jsonld",
"@context": [
"https://raw.githubusercontent.com/jsonld-java/jsonld-java/master/core/src/test/resources/custom/monarch-context.jsonld",
{
"@base": "http://example.org/base/",
"ex": "http://example.org/",
......@@ -13,4 +13,5 @@
"ex:name": "Jim",
"ex:friendOf": "1234",
"@type": "Person"
}
\ No newline at end of file
}
{
"@context": [
"@context": [
{
"@base": "http://example.org/base/",
"ex": "http://example.org/",
......@@ -7,10 +7,11 @@
"@type": "@id"
}
},
"https://raw.githubusercontent.com/monarch-initiative/monarch-app/master/conf/monarch-context.jsonld"
"https://raw.githubusercontent.com/jsonld-java/jsonld-java/master/core/src/test/resources/custom/monarch-context.jsonld"
],
"@id": "3456",
"ex:name": "Jim",
"ex:friendOf": "1234",
"@type": "Person"
}
\ No newline at end of file
}
{
"@context" : {
"EFO" : "http://purl.obolibrary.org/obo/EFO_",
"obo" : "http://purl.obolibrary.org/obo/",
"inheritance" : "monarch:mode_of_inheritance",
"@base" : "http://monarch-initiative.org/",
"email" : "foaf:mbox",
"BIND" : "http://identifiers.org/bind/bind:",
"morpholino" : "GENO:0000417",
"GENO" : "http://purl.obolibrary.org/obo/GENO_",
"UMLS" : "http://purl.obolibrary.org/obo/UMLS_",
"dcat" : "http://www.w3.org/ns/dcat#",
"PMID" : "http://www.ncbi.nlm.nih.gov/pubmed/",
"MP" : "http://purl.obolibrary.org/obo/MP_",
"ISBN-10" : "http://monarch-initiative.org/publications/ISBN:",
"rdf" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"title" : "dc:title",
"Class" : "owl:Class",
"FBbt" : "http://purl.obolibrary.org/obo/FBbt_",
"pathway_associations" : "rdfs:seeAlso",
"FBInternalGT" : "http://monarchinitiative.org/genotype/",
"has_genotype" : "GENO:0000222",
"genotype" : "GENO:0000000",
"void" : "http://rdfs.org/ns/void#",
"has_phenotype" : "RO:0002200",
"reference_locus" : "GENO:0000036",
"dbVar" : "http://identifiers.org/dbVar_",
"AQTLTrait" : "http://purl.obolibrary.org/obo/AQTLTrait_",
"phenotype_associations" : "rdfs:seeAlso",
"ECO" : "http://purl.obolibrary.org/obo/ECO_",
"WB" : "http://identifiers.org/WormBase:",
"rdfs" : "http://www.w3.org/2000/01/rdf-schema#",
"variant_loci" : "GENO:0000027",
"MedGen" : "http://purl.obolibrary.org/obo/MedGen_",
"creator" : {
"@id" : "dc:creator",
"@type" : "@id"
},
"SIO" : "http://semanticscience.org/resource/SIO_",
"DOID" : "http://purl.obolibrary.org/obo/DOID_",
"Ensembl" : "http://identifiers.org/ensembl:",
"id" : "@id",
"publisher" : "dc:publisher",
"depiction" : {
"@id" : "foaf:depiction",
"@type" : "@id"
},
"ENSEMBL" : "http://identifiers.org/ensembl:",
"monarch" : "http://monarchinitiative.org/",
"ORPHANET" : "http://purl.obolibrary.org/obo/ORPHANET_",
"owl" : "http://www.w3.org/2002/07/owl#",
"GeneReviews" : "http://www.ncbi.nlm.nih.gov/books/",
"SNOMED_CT" : "http://purl.obolibrary.org/obo/SNOMED_",
"chromosomal_region" : "GENO:0000390",
"EOM" : "http://purl.obolibrary.org/obo/EOM_",
"type" : {
"@id" : "rdf:type",
"@type" : "@id"
},
"FlyBase" : "http://identifiers.org/flybase:",
"DECIPHER" : "http://purl.obolibrary.org/obo/DECIPHER_",
"faldo" : "http://biohackathon.org/resource/faldo#",
"prov" : "http://www.w3.org/ns/prov#",
"MIM" : "http://purl.obolibrary.org/obo/OMIM_",
"genomic_variation_complement" : "GENO:0000009",
"evidence" : "monarch:evidence",
"BioGRID" : "http://purl.obolibrary.org/BioGRID_",
"dcterms" : "http://purl.org/dc/terms/",
"sequence_alteration" : "SO:0001059",
"RO" : "http://purl.obolibrary.org/obo/RO_",
"created" : {
"@id" : "dc:created",
"@type" : "xsd:dateTime"
},
"Orphanet" : "http://purl.obolibrary.org/obo/ORPHANET_",
"oa" : "http://www.w3.org/ns/oa#",
"SGD" : "http://identifiers.org/mgd/sgd:",
"Gene" : "http://purl.obolibrary.org/obo/NCBIGene_",
"PomBase" : "http://identifiers.org/PomBase:",
"genotype_associations" : "rdfs:seeAlso",
"xsd" : "http://www.w3.org/2001/XMLSchema#",
"OMIABreed" : "http://purl.obolibrary.org/obo/OMIA_",
"TAIR" : "http://identifiers.org/mgd/tair:",
"oboInOwl" : "http://www.geneontology.org/formats/oboInOwl#",
"description" : "dc:description",
"disease" : "monarch:disease",
"OMIAPub" : "http://purl.obolibrary.org/obo/OMIAPub_",
"foaf" : "http://xmlns.com/foaf/0.1/",
"idot" : "http://identifiers.org/",
"subClassOf" : "owl:subClassOf",
"source" : "dc:source",
"keyword" : "dcat:keyword",
"onset" : "monarch:age_of_onset",
"genomic_background" : "GENO:0000010",
"dictyBase" : "http://identifiers.org/dictyBase:",
"OMIA" : "http://purl.obolibrary.org/obo/OMIA_",
"has_part" : "BFO:0000051",
"ClinVarVariant" : "http://identifiers.org/ClinVarVariant_",
"gene_locus" : "GENO:0000014",
"effective_genotype" : "GENO:0000525",
"VT" : "http://purl.obolibrary.org/obo/VT_",
"Association" : "SIO:000897",
"resource" : "monarch:nif-resource",
"KEGG" : "http://identifiers.org/kegg:",
"Annotation" : "oa:Annotation",
"FBdv" : "http://purl.obolibrary.org/obo/FBdv_",
"GeneID" : "http://purl.obolibrary.org/obo/NCBIGene_",
"has_background" : "GENO:0000010",
"BFO" : "http://purl.obolibrary.org/obo/BFO_",
"FB" : "http://identifiers.org/flybase:",
"frequency" : "monarch:frequency",
"ZP" : "http://purl.obolibrary.org/obo/ZP_",
"OMIM" : "http://purl.obolibrary.org/obo/OMIM_",
"MGI" : "http://identifiers.org/mgd/MGI:",
"dc" : "http://purl.org/dc/terms/",
"MONARCH" : "http://monarchinitiative.org/MONARCH_",
"ClinVarHaplotype" : "http://identifiers.org/ClinVarHaplotype_",
"homepage" : {
"@id" : "foaf:homepage",
"@type" : "@id"
},
"RGD" : "http://identifiers.org/mgd/rgd:",
"CORIELL" : "http://purl.obolibrary.org/obo/CORIELL_",
"label" : "rdfs:label",
"NCBIGene" : "http://purl.obolibrary.org/obo/NCBIGene_",
"intrinsic_genotype" : "GENO:0000000",
"FBcv" : "http://purl.obolibrary.org/obo/FBcv_",
"WBStrain" : "http://identifiers.org/WormBase:",
"sequence_alteration_collection" : "GENO:0000025",
"reference" : "dc:publication",
"zygosity" : "GENO:0000133",
"chromosome" : "GENO:0000323",
"WormBase" : "http://identifiers.org/WormBase:",
"HPRD" : "http://identifiers.org/hprd/hprd:",
"ClinVar" : "http://purl.obolibrary.org/obo/ClinVar_",
"ISBN-13" : "http://monarch-initiative.org/publications/ISBN:",
"extrinsic_genotype" : "GENO:0000524",
"NCBITaxon" : "http://purl.obolibrary.org/obo/NCBITaxon_",
"environment" : "GENO:0000099",
"variant_locus" : "GENO:0000481",
"comment" : "rdfs:comment",
"SO" : "http://purl.obolibrary.org/obo/SO_",
"phenotype" : "monarch:phenotype",
"ZFIN" : "http://identifiers.org/zfin:",
"HP" : "http://purl.obolibrary.org/obo/HP_",
"MESH" : "http://purl.obolibrary.org/obo/MESH_",
"dbSNP" : "http://identifiers.org/dbSNP_"
}
}
......@@ -4,7 +4,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>com.github.jsonld-java</groupId>
<artifactId>jsonld-java-parent</artifactId>
<version>0.13.4</version>
<version>0.13.6</version>
<name>JSONLD Java :: Parent</name>
<description>Json-LD Java Parent POM</description>
<packaging>pom</packaging>
......@@ -41,7 +41,8 @@
<httpclient.version>4.5.13</httpclient.version>
<httpcore.version>4.4.14</httpcore.version>
<jackson.version>2.11.4</jackson.version>
<jackson.version>2.12.7</jackson.version>
<jackson-databind.version>2.12.7.1</jackson-databind.version>
<junit.version>4.13.2</junit.version>
<slf4j.version>1.7.32</slf4j.version>
<logback.version>1.2.7</logback.version>
......@@ -66,7 +67,7 @@
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.version}</version>
<version>${jackson-databind.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
......@@ -211,7 +212,7 @@
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>29.0-jre</version>
<version>32.1.3-jre</version>
</dependency>
</dependencies>
</dependencyManagement>
......
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