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bcftools (1.18-2) unstable; urgency=medium
* skip_new_test_failing_on_32bit.patch: refresh.
* tests-pluginpath.patch: refresh.
* fix-bus-error-armhf.patch: new: fix Bus errors.
Thanks to Rob Davies (Closes: #1055669)
-- Étienne Mollier <emollier@debian.org> Thu, 23 Nov 2023 12:01:34 +0100
bcftools (1.18-1) unstable; urgency=medium
* Team upload.
......
This diff is collapsed.
tests-pluginpath.patch
skip_new_test_failing_on_32bit.patch
2to3.patch
fix-bus-error-armhf.patch
......@@ -9,9 +9,9 @@ Description: Skip single test causing new failures
.
FIXME: This workaround needs to be reconsidered in future versions
--- a/test/test.pl
+++ b/test/test.pl
@@ -194,7 +194,7 @@ run_test(\&test_vcf_query,$opts,in=>'que
--- bcftools.orig/test/test.pl
+++ bcftools/test/test.pl
@@ -202,7 +202,7 @@
run_test(\&test_vcf_query,$opts,in=>'query.filter.11',out=>'query.81.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]' -e'N_PASS(GT="alt")==1']);
run_test(\&test_vcf_query,$opts,in=>'query.filter.11',out=>'query.80.out',args=>q[-f'[%POS\\t%SAMPLE\\t%GT\\n]' -e'N_PASS(GT="alt")!=1']);
run_test(\&test_vcf_query,$opts,in=>'query',out=>'query.64.out',args=>q[-f'%CHROM\\t%POS\\t%INFO\\t%FORMAT\\n' -s D,C]);
......
......@@ -8,9 +8,9 @@ Description: Set the bcftools plugin path to search system directories
Author: Afif Elghraoui <afif@ghraoui.name>
Forwarded: not-needed
Last-Update: 2015-11-09
--- a/test/test.pl
+++ b/test/test.pl
@@ -1582,7 +1582,7 @@ sub test_vcf_plugin
--- bcftools.orig/test/test.pl
+++ bcftools/test/test.pl
@@ -1704,7 +1704,7 @@
{
my ($opts,%args) = @_;
if ( !$$opts{test_plugins} ) { return; }
......