Tags

htslib (1.3-1~bpo8+1) jessie-backports; urgency=medium

  * Rebuild for jessie-backports.

 -- Charles Plessy <plessy@debian.org>  Mon, 08 Feb 2016 12:42:45 +0900

htslib Debian release 1.3-1

HTSlib release 1.3, plugins, libcurl, CRAM v3.0, bug fixes

* Files can now be accessed via HTTPS and Amazon S3 in addition to HTTP
  and FTP, when HTSlib is configured to use libcurl for network file access
  rather than the included basic knetfile networking.

* HTSlib can be built to use remote access hFILE backends (such as iRODS
  and libcurl) via a plugin mechanism.  This allows other backends to be
  easily added and facilitates building tools that use HTSlib, as they
  don't need to be linked with the backends' various required libraries.

* fai_build() and samtools faidx now accept initial whitespace in ">"
  headers (e.g., "> chr1 description" is taken to refer to "chr1").

* tabix --only-header works again (was broken in 1.2.x; #249).

* HTSlib's configure script and Makefile now fully support the standard
  convention of allowing CC/CPPFLAGS/CFLAGS/LDFLAGS/LIBS to be overridden
  as needed.  Previously the Makefile listened to $(LDLIBS) instead; if you
  were overriding that, you should now override LIBS rather than LDLIBS.

* Fixed bugs #168, #172, #176, #197, #206, #225, #245, #265, #295, and #296.

htslib (1.2.1-1~bpo8+1) jessie-backports; urgency=medium

  * Team upload.
  * Rebuild for jessie-backports.

 -- Afif Elghraoui <afif@ghraoui.name>  Mon, 28 Sep 2015 18:43:33 -0700

htslib (1.2.1-1) unstable; urgency=medium

  0662716 Merge tag '1.2.1' into debian/unstable
  084f27d Install NEWS as upstream changelog.
  316fb96 Override a Lintian false positive.
  3363679 Clean test directory.
  69bf167 Corrected a typo in tabix description.

 -- Charles Plessy <plessy@debian.org>  Mon, 25 May 2015 13:35:03 +0900

HTSlib patch release 1.2.1, reinstated hts_file_type()

HTSlib release 1.2, CRAM and format detection improvements

htslib (1.1-1) unstable; urgency=medium

  1357fbd Merge tag '1.1' into debian/unstable
  87549cd Updated symbols file.  One symbol is missing.
  873ea9b Removed orphan paragraph in machine-readable copyright file.
  49de2b9 Allow parallel build.
  7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
  0e5e9e6 Conforms to Policy 3.9.6.

 -- Charles Plessy <plessy@debian.org>  Wed, 24 Sep 2014 21:24:11 +0900

HTSlib release 1.1, various bug fixes

htslib (1.0-2) unstable; urgency=medium

  Uploaded to unstable (see previous changelog from experimental).

 -- Charles Plessy <plessy@debian.org>  Tue, 16 Sep 2014 20:27:04 +0900

htslib (1.0-1) experimental; urgency=low

  cc559b8 Merged with upstream's master branch.
  74b9d7b Build on the master branch.
  04815a7 New major version (libhts0 -> libhts1).
  98c18ca Updated symbols file.
  22fef0c Install pkgconfig file.
  420896b Override PACKAGE_VERSION to avoid tags with a slash in the name.
  79b5d4e Use the Debian package version as PACKAGE_VERSION.
  72b5c4a Finally use the 3.0 (quilt) format in single-debian-patch mode.
  d870946 Adjusted substitution variables following dpkg's warnings.
  9469458 Removed debug command accidentally introduced.
  8c7f7d4 Replace the old tabix package from the tabix source package.

 -- Charles Plessy <plessy@debian.org>  Sun, 17 Aug 2014 20:12:28 +0900

First HTSlib release, supporting SAM/BAM/CRAM/VCF/BCF

Test release RC12

Test release RC11

Test release RC10

Test release RC9

Test release RC8

Test release RC7

Test release RC6