New upstream version 956
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- ChangeLog.txt 106 additions, 1 deletionChangeLog.txt
- doc/last-papers.html 5 additions, 0 deletionsdoc/last-papers.html
- doc/last-papers.txt 8 additions, 0 deletionsdoc/last-papers.txt
- doc/last-split.html 5 additions, 0 deletionsdoc/last-split.html
- doc/last-split.txt 5 additions, 0 deletionsdoc/last-split.txt
- doc/last-train.html 29 additions, 11 deletionsdoc/last-train.html
- doc/last-train.txt 31 additions, 10 deletionsdoc/last-train.txt
- doc/lastal.html 11 additions, 10 deletionsdoc/lastal.html
- doc/lastal.txt 12 additions, 9 deletionsdoc/lastal.txt
- doc/lastdb.html 7 additions, 0 deletionsdoc/lastdb.html
- doc/lastdb.txt 7 additions, 0 deletionsdoc/lastdb.txt
- scripts/fastq-interleave 11 additions, 4 deletionsscripts/fastq-interleave
- scripts/last-dotplot 4 additions, 3 deletionsscripts/last-dotplot
- scripts/last-map-probs 22 additions, 6 deletionsscripts/last-map-probs
- scripts/last-postmask 15 additions, 13 deletionsscripts/last-postmask
- scripts/last-train 32 additions, 48 deletionsscripts/last-train
- scripts/maf-convert 20 additions, 15 deletionsscripts/maf-convert
- scripts/maf-join 30 additions, 22 deletionsscripts/maf-join
- scripts/maf-swap 71 additions, 63 deletionsscripts/maf-swap
- src/Alignment.cc 1 addition, 1 deletionsrc/Alignment.cc
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